ramay

@IMCBioinformatics

Pinned Repositories

dada2_16S_workflow
Amplicon sequencing workflow with snakemake and dada2
Language:R2 1 21
Dysbiosis_Score_HMP2_IBD
Generates dysbiotic score for HMP2 IBD metagenomics samples
Language:R1 2 00
FemMicro16s
A collection of vaginal microbiome datasets
0 1 00
flowCore
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/flowCore.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=flowCore.
Language:R0 1 00
game_of_life
python game
Language:Python0 1 00
metakraken
A snakemake pipeline to process metagenomics samples through kraken + bracken to generate taxonomic profiles
Language:R4 1 21
MIC_2022
0 0 00
metannotate
Snakemake pipeline for running HUMAnN3.6
Language:Python6 3 01
metaphlan
Snakemake pipeline for running MetaPhlAn3
2 3 21
metaphlan4
This repo has metaphlan version 4 with the SGB database and taxonomy can be converted to GTDB
Language:Python3 3 00

ramay's Repositories

ramay/metakraken
A snakemake pipeline to process metagenomics samples through kraken + bracken to generate taxonomic profiles
Language:R4 1 21
ramay/Dysbiosis_Score_HMP2_IBD
Generates dysbiotic score for HMP2 IBD metagenomics samples
Language:R1 2 00
ramay/FemMicro16s
A collection of vaginal microbiome datasets
0 1 00
ramay/flowCore
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/flowCore.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=flowCore.
Language:R0 1 00
ramay/game_of_life
python game
Language:Python0 1 00
ramay/MIC_2022
0 0 00