Possibility of detect the sleep stages on less than 5min of data
nabilalibou opened this issue ยท 4 comments
Hello,
I am using the automatic sleep staging module to detect sleeping subjects on 5 minutes of data (i know the model has been trained on long night sleep but the accuracy looks good enough in my case) but sometimes because of some cropping I have subjects with 4min58 of data and so they are left out.
Is there a reason why SleepStaging()
cannot be instantiated on raw instance containing less than 5 minutes of data ?
I was wondering if it was possible to turn the 'not enough data' error into a warning but maybe there are technical issues (for example some smoothing windows with an hardcoded minimum length etc) that would make the possibility tedious to enable ?
Hi @nabilalibou,
Your intuition was right: the main reason for such a duration threshold is that YASA uses 7:30 min smoothing windows. I don't think we want to completely disable this duration threshold in YASA, but you can manually do it by to cloning YASA, installing it from the source (python setup.py develop
) and then disabling this line:
Line 204 in ae9ccc7
Ok so removing the assertion allows yasa to function without any other errors on <5min data even if there is a 7:30 min smoothing windows that will be applied ?
Thx for the tips but I admit that if the only blocker is the assertion, I'd be very happy if this was replaced by a warning so that I can use the source version of yasa directly on data less than 5 minutes old ๐.
Is it a matter of restricting yasa scope to long night of sleep because you're really not sure about the model's performance on nap data ?
Ok so removing the assertion allows yasa to function without any other errors on <5min data even if there is a 7:30 min smoothing windows that will be applied ?
I actually have never tried it so I don't know, but I think most likely yes, although the output might be unreliable.
Is it a matter of restricting yasa scope to long night of sleep because you're really not sure about the model's performance on nap data ?
Indeed, but feel free to submit a PR to replace the assertion by a warning ๐
Indeed, but feel free to submit a PR to replace the assertion by a warning ๐
Will do!