`goquartical help` is broken
Closed this issue · 2 comments
Joshuaalbert commented
Describe the bug
goquartical help
Traceback (most recent call last):
File "/usr/local/bin/goquartical", line 5, in <module>
from quartical.executor import execute
File "/usr/local/lib/python3.10/site-packages/quartical/executor.py", line 8, in <module>
from quartical.config import parser, preprocess, helper, internal
File "/usr/local/lib/python3.10/site-packages/quartical/config/parser.py", line 8, in <module>
from quartical.config.internal import additional_validation
File "/usr/local/lib/python3.10/site-packages/quartical/config/internal.py", line 2, in <module>
from quartical.gains import TERM_TYPES
File "/usr/local/lib/python3.10/site-packages/quartical/gains/__init__.py", line 1, in <module>
from quartical.gains.complex import Complex, DiagComplex
File "/usr/local/lib/python3.10/site-packages/quartical/gains/complex/__init__.py", line 2, in <module>
from quartical.gains.gain import Gain
File "/usr/local/lib/python3.10/site-packages/quartical/gains/gain.py", line 5, in <module>
from quartical.gains.general.flagging import (
File "/usr/local/lib/python3.10/site-packages/quartical/gains/general/flagging.py", line 7, in <module>
from quartical.gains.general.convenience import get_row
File "/usr/local/lib/python3.10/site-packages/quartical/gains/general/convenience.py", line 26, in <module>
def get_dims(col, row_map):
File "/usr/local/lib/python3.10/site-packages/numba/core/decorators.py", line 234, in wrapper
disp.enable_caching()
File "/usr/local/lib/python3.10/site-packages/numba/core/dispatcher.py", line 863, in enable_caching
self._cache = FunctionCache(self.py_func)
File "/usr/local/lib/python3.10/site-packages/numba/core/caching.py", line 601, in __init__
self._impl = self._impl_class(py_func)
File "/usr/local/lib/python3.10/site-packages/numba/core/caching.py", line 337, in __init__
raise RuntimeError("cannot cache function %r: no locator available "
RuntimeError: cannot cache function 'get_dims': no locator available for file '/usr/local/lib/python3.10/site-packages/quartical/gains/general/convenience.py'Version
aiobotocore==2.7.0
aiohttp==3.8.6
aioitertools==0.11.0
aiosignal==1.3.1
antlr4-python3-runtime==4.9.3
anyio==4.0.0
appdirs==1.4.4
argon2-cffi==23.1.0
argon2-cffi-bindings==21.2.0
arrow==1.3.0
asciitree==0.3.3
astLib==0.11.10
astro-kittens==1.4.6
astro-tigger-lsm==1.7.2
astropy==5.3.4
asttokens==2.4.0
async-lru==2.0.4
async-timeout==4.0.3
attrs==23.1.0
Babel==2.13.0
backcall==0.2.0
beautifulsoup4==4.12.2
bleach==6.1.0
bokeh==3.3.0
botocore==1.31.64
certifi==2023.7.22
cffi==1.16.0
charset-normalizer==3.3.1
cli-ui==0.17.2
click==8.1.7
cloudpickle==3.0.0
codex-africanus==0.3.4
colorama==0.4.6
Columnar==1.4.1
comm==0.1.4
commonmark==0.9.1
configparser==6.0.0
contextlib2==21.6.0
contourpy==1.1.1
cycler==0.12.1
dask==2023.10.0
dask-ms==0.2.18
debugpy==1.8.0
decorator==5.1.1
defusedxml==0.7.1
dill==0.3.7
distributed==2023.10.0
docopt==0.6.2
donfig==0.7.0
exceptiongroup==1.1.3
executing==2.0.0
fasteners==0.19
fastjsonschema==2.18.1
fonttools==4.43.1
fqdn==1.5.1
frozenlist==1.4.0
fsspec==2023.10.0
future==0.18.3
idna==3.4
importlib-metadata==6.8.0
iniconfig==2.0.0
ipykernel==6.25.2
ipython==8.16.1
ipython-genutils==0.2.0
ipywidgets==8.1.1
isoduration==20.11.0
jedi==0.19.1
Jinja2==3.1.2
jmespath==1.0.1
json5==0.9.14
jsonpointer==2.4
jsonschema==4.19.1
jsonschema-specifications==2023.7.1
jupyter==1.0.0
jupyter-console==6.6.3
jupyter-events==0.8.0
jupyter-lsp==2.2.0
jupyter_client==8.4.0
jupyter_core==5.4.0
jupyter_server==2.8.0
jupyter_server_terminals==0.4.4
jupyterlab==4.0.7
jupyterlab-pygments==0.2.2
jupyterlab-widgets==3.0.9
jupyterlab_server==2.25.0
kiwisolver==1.4.5
llvmlite==0.41.1
locket==1.0.0
loguru==0.7.2
MarkupSafe==2.1.3
matplotlib==3.8.0
matplotlib-inline==0.1.6
mistune==3.0.2
msgpack==1.0.7
multidict==6.0.4
munch==2.5.0
nbclient==0.8.0
nbconvert==7.9.2
nbformat==5.9.2
nest-asyncio==1.5.8
notebook==7.0.6
notebook_shim==0.2.3
numba==0.58.1
numcodecs==0.12.1
numpy==1.23.5
omegaconf==2.3.0
overrides==7.4.0
packaging==23.2
pandas==2.1.1
pandocfilters==1.5.0
parso==0.8.3
partd==1.4.1
pexpect==4.8.0
pickleshare==0.7.5
Pillow==10.1.0
platformdirs==3.11.0
pluggy==1.3.0
prometheus-client==0.17.1
prompt-toolkit==3.0.39
psutil==5.9.6
ptyprocess==0.7.0
pure-eval==0.2.2
pycparser==2.21
pydantic==1.10.13
pyerfa==2.0.1.1
Pygments==2.16.1
pyparsing==3.1.1
pytest==7.4.2
python-casacore==3.5.2
python-dateutil==2.8.2
python-json-logger==2.0.7
pytz==2023.3.post1
PyYAML==6.0.1
pyzmq==25.1.1
qtconsole==5.4.4
QtPy==2.4.0
quartical==0.2.0
referencing==0.30.2
requests==2.31.0
rfc3339-validator==0.1.4
rfc3986-validator==0.1.1
rich==12.6.0
rpds-py==0.10.6
ruamel.yaml==0.17.40
ruamel.yaml.clib==0.2.8
s3fs==2023.10.0
schema==0.7.5
scipy==1.11.3
Send2Trash==1.8.2
six==1.16.0
sniffio==1.3.0
sortedcontainers==2.4.0
soupsieve==2.5
stack-data==0.6.3
stimela==2.0rc4
tabulate==0.8.10
tblib==3.0.0
tbump==6.11.0
terminado==0.17.1
tinycss2==1.2.1
tomli==2.0.1
tomlkit==0.11.8
toolz==0.12.0
tornado==6.3.3
traitlets==5.11.2
types-python-dateutil==2.8.19.14
typing_extensions==4.8.0
tzdata==2023.3
Unidecode==1.3.7
uri-template==1.3.0
urllib3==2.0.7
wcwidth==0.2.8
webcolors==1.13
webencodings==0.5.1
websocket-client==1.6.4
widgetsnbextension==4.0.9
wrapt==1.15.0
xarray==2023.10.1
xyzservices==2023.10.0
yarl==1.9.2
zarr==2.16.1
zict==3.0.0
zipp==3.17.0
JSKenyon commented
This looks like it might be environment related. Specifically, it looks like numba is upset about its cache. This can be due to permissions and we have seen the like when running on AWS. Could you please try setting the NUMBA_CHACHE_DIR environment variable to point to a location where you have permissions? See the following for an explanation: https://numba.pydata.org/numba-doc/dev/reference/envvars.html#envvar-NUMBA_CACHE_DIR
Joshuaalbert commented
Thanks, yep it was permissions. Resolved!