Can't find input directory
emilhaegglund opened this issue · 1 comments
emilhaegglund commented
Hey, trying to run the first step of the pipeline and it can't find the input directory, it looks like all / are removed from the directory path.
python broccoli.py -step 1 -threads 28 -dir /data/emil/proteomes/ -ext .faa
Broccoli v1.0
--- STEP 1: kmer clustering
# parameters
proteomes dir : ./dataemilproteomes/
kmer size : 100
min size seq : 10
min nb aa : 15
# check input files
ERROR STEP 1: the directory ' ./dataemilproteomes/ ' does not exist.
Best regards,
Emil
rderelle commented
Hi Emil,
thanks. I have fixed this bug.
Please download the new version (v1.01) and give it a try.
I will later release a new version of Broccoli, Windows compatible, that better handle paths and filenames.