Pinned Repositories
ddmp
Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.
diversity-scripts
hima
A Meta-database of Low Temperature Genomes and Metagenomes
microscape
Visualizing Microbial Landscapes
miniona
realtime krona plots during a minION run
pangenome
Models of the Microbial Pangenome
rec-genome-tools
seaicespiral
Sea Ice Death Spiral animation
sedna
SEDNA: Spherical Exploration of Diversity using Nucleic Acid sequences
VirFinder
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
rec3141's Repositories
rec3141/pangenome
Models of the Microbial Pangenome
rec3141/diversity-scripts
rec3141/VirFinder
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
rec3141/microscape
Visualizing Microbial Landscapes
rec3141/sedna
SEDNA: Spherical Exploration of Diversity using Nucleic Acid sequences
rec3141/ag_thesis
rec3141/bbpipe-snakemake
rec3141/Colwelliaceae-OGT-Genomic-Signatures
rec3141/cs228-material
Teaching materials for the probabilistic graphical models and deep learning classes at Stanford
rec3141/DOSNES
Doubly Stochastic Neighbor Embedding on Spheres
rec3141/FIt-SNE
Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
rec3141/Genomic-Signatures-of-OGT-2020-
rec3141/Image_Classifier_Application
rec3141/image_classifier_pytorch
This is the repo for the Free Code Camp article, "How to build an image classifier with greater than 97% accuracy." Classifier utilizes Python, PyTorch, Numpy, Matplotlib, Seaborn, JSON, and PIL.
rec3141/metta
metagenome assembly, binning, and visualization
rec3141/mlites
Machine Learning in the Environmental Sciences
rec3141/OGT_prediction
Scripts for calculating features and regression of prokaryote OGT
rec3141/Oncoscape
a web application to apply/develop analysis tools for Molecular and Clinical data
rec3141/p3_docs
This repository is for manage PATRIC static contents such as Website Tutorial, CLI Tutorial, User Guides, and PATRIC eNews.
rec3141/pavian
Interactive analysis of metagenomics data
rec3141/Research
rec3141/rml_thesis
rec3141/Rtsnesphere
R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding WITH SPHERICAL EMBEDDING
rec3141/Schmidt_et_al_2016_community_similarity
Analysis code for a manuscript on community similarity computation
rec3141/seattlecrows
Automatically exported from code.google.com/p/seattlecrows
rec3141/sverdrup
Sverdrup's 1953 Critical Depth Hypothesis
rec3141/topic-functional-annotation
A repository for the lessons and notebooks used for Binder tutorials
rec3141/topic-metagenomics
A repository for the lessons and notebooks used for Binder tutorials
rec3141/underway
R scripts for real-time analysis of underway flow-through data aboard the USCGC Healy and other ships running MetAcq software
rec3141/visualizations-in-microbiology
Data and images for communicating concepts in microbiology