reillyowencooper
Microbial ecologist. Interested in metagenomes, host-associated microbes, and more
Upward FarmsCalifornia
Pinned Repositories
ab-targeting-daphnia
Targeted manipulation of abundant and rare taxa in the Daphnia magna microbiota with antibiotics impacts host fitness differentially. Reilly O. Cooper, Janna M. Vavra, Clayton E. Cressler.
agnostos-wf
anvio
An analysis and visualization platform for 'omics data
bioutils
A collection of Python code that I use more often than not
circadian_microbiome
This project contains code for: Pfenning-Butterworth A.C, Cooper R.O., and Cressler C.E. Diel rhythm influences microbiota composition in two zooplankton species.
daphnia_magna_metagenome
All scripts used for data analysis and visualization in "Characterization of core bacterial species in the Daphnia magna microbiota using shotgun metagenomics".
daphnia_multigenerational_antibiotics
Multiple generations of antibiotic exposure and isolation influence host fitness and the microbiome in a model zooplankton species. Cooper RO, Tjards S, Hotovy J, Nguyen DT, Cressler CE.
magweaver
PatientRiskAssessment
A patient risk assessment iOS application as part of the Hack:Now hackathon competition
pyani
Python module for average nucleotide identity analyses
reillyowencooper's Repositories
reillyowencooper/daphnia_magna_metagenome
All scripts used for data analysis and visualization in "Characterization of core bacterial species in the Daphnia magna microbiota using shotgun metagenomics".
reillyowencooper/ab-targeting-daphnia
Targeted manipulation of abundant and rare taxa in the Daphnia magna microbiota with antibiotics impacts host fitness differentially. Reilly O. Cooper, Janna M. Vavra, Clayton E. Cressler.
reillyowencooper/agnostos-wf
reillyowencooper/anvio
An analysis and visualization platform for 'omics data
reillyowencooper/bioutils
A collection of Python code that I use more often than not
reillyowencooper/circadian_microbiome
This project contains code for: Pfenning-Butterworth A.C, Cooper R.O., and Cressler C.E. Diel rhythm influences microbiota composition in two zooplankton species.
reillyowencooper/daphnia_multigenerational_antibiotics
Multiple generations of antibiotic exposure and isolation influence host fitness and the microbiome in a model zooplankton species. Cooper RO, Tjards S, Hotovy J, Nguyen DT, Cressler CE.
reillyowencooper/magweaver
reillyowencooper/PatientRiskAssessment
A patient risk assessment iOS application as part of the Hack:Now hackathon competition
reillyowencooper/pyani
Python module for average nucleotide identity analyses
reillyowencooper/reillyowencooper.github.io