reneshbedre/bioinfokit

Labeling most significant/highest log fold change?

theclairecamp opened this issue · 1 comments

I was wondering if it is possible to label the values that are above a certain p-value and logfoldchange threshold with in the genenames parameter, instead of having to change the threshold within lfc_thr and pv_thr? Like by using indexes for tubles?
Thanks!

Hi @theclairecamp ,

If you set genenames='deg' , it will label all the points of up and down-regulated genes as defined by your threshold lfc_thr and pv_thr. See documentation at https://reneshbedre.github.io/blog/howtoinstall.html#volcano-plot

Let me know if it resolves your issue. Thank you for using bioinfokit for your work.