New Data: 100 patient histories and their 1-year predicted risks of multiple outcomes
jreps opened this issue · 2 comments
jreps commented
- Dataset name: Patient-Risk-Profiles
- Dataset download URL: predictionDataFinal.csv
- Description: This dataset contains 100 simulated patient's medical history features and the predicted 1-year risk of 14 outcomes based on each patient's medical history features. The predictions used real logistic regression models developed on a large real world healthcare dataset.
Data dictionary:
| variable | class | description |
|---|---|---|
| personId | integer | A unique identifier for the simulated patient |
| age.group...10....14 | integer | A binary column where 1 means the patient is aged between 10-14 (inclusive) and 0 means the patient is not in that age group |
| age.group...15....19 | integer | A binary column where 1 means the patient is aged between 15-19 (inclusive) and 0 means the patient is not in that age group |
| age.group...20....24 | integer | A binary column where 1 means the patient is aged between 20-24 (inclusive) and 0 means the patient is not in that age group |
| age.group...65....69 | integer | A binary column where 1 means the patient is aged between 65-69 (inclusive) and 0 means the patient is not in that age group |
| age.group...40....44 | integer | A binary column where 1 means the patient is aged between 40-44 (inclusive) and 0 means the patient is not in that age group |
| age.group...45....49 | integer | A binary column where 1 means the patient is aged between 45-49 (inclusive) and 0 means the patient is not in that age group |
| age.group...55....59 | integer | A binary column where 1 means the patient is aged between 55-59 (inclusive) and 0 means the patient is not in that age group |
| age.group...85....89 | integer | A binary column where 1 means the patient is aged between 85-89 (inclusive) and 0 means the patient is not in that age group |
| age.group...75....79 | integer | A binary column where 1 means the patient is aged between 75-79 (inclusive) and 0 means the patient is not in that age group |
| age.group....5.....9 | integer | A binary column where 1 means the patient is aged between 5-9 (inclusive) and 0 means the patient is not in that age group |
| age.group...25....29 | integer | A binary column where 1 means the patient is aged between 25-29 (inclusive) and 0 means the patient is not in that age group |
| age.group....0.....4 | integer | A binary column where 1 means the patient is aged between 0-4 (inclusive) and 0 means the patient is not in that age group |
| age.group...70....74 | integer | A binary column where 1 means the patient is aged between 70-74 (inclusive) and 0 means the patient is not in that age group |
| age.group...50....54 | integer | A binary column where 1 means the patient is aged between 50-54 (inclusive) and 0 means the patient is not in that age group |
| age.group...60....64 | integer | A binary column where 1 means the patient is aged between 60-64 (inclusive) and 0 means the patient is not in that age group |
| age.group...35....39 | integer | A binary column where 1 means the patient is aged between 35-39 (inclusive) and 0 means the patient is not in that age group |
| age.group...30....34 | integer | A binary column where 1 means the patient is aged between 30-34 (inclusive) and 0 means the patient is not in that age group |
| age.group...80....84 | integer | A binary column where 1 means the patient is aged between 80-84 (inclusive) and 0 means the patient is not in that age group |
| age.group...90....94 | integer | A binary column where 1 means the patient is aged between 90-94 (inclusive) and 0 means the patient is not in that age group |
| sex...FEMALE | integer | A binary column where 1 means the patient has a female sex |
| sex...MALE | integer | A binary column where 1 means the patient has a male sex |
| Acetaminophen.exposures.in.prior.year | integer | A binary column where 1 means the patient had a record for acetaminophen in the prior year and 0 means they did not |
| Occurrence.of.Alcoholism.in.prior.year | integer | A binary column where 1 means the patient had a record for alcoholism in the prior year and 0 means they did not |
| Anemia.in.prior.year | integer | A binary column where 1 means the patient had a record for anemia in the prior year and 0 means they did not |
| Angina.events.in.prior.year | integer | A binary column where 1 means the patient had a record for angina in the prior year and 0 means they did not |
| ANTIEPILEPTICS.in.prior.year | integer | A binary column where 1 means the patient had a record for a drug in the category ANTIEPILEPTICS in the prior year and 0 means they did not |
| Occurrence.of.Anxiety.in.prior.year | integer | A binary column where 1 means the patient had a record for anxiety in the prior year and 0 means they did not |
| Osteoarthritis.in.prior.year | integer | A binary column where 1 means the patient had a record for osteoarthritis in the prior year and 0 means they did not |
| Aspirin.exposures.in.prior.year | integer | A binary column where 1 means the patient had a record for aspirin in the prior year and 0 means they did not |
| Occurrence.of.Asthma.in.prior.year | integer | A binary column where 1 means the patient had a record for asthma in the prior year and 0 means they did not |
| Atrial.Fibrillation..incident.in.prior.year | integer | A binary column where 1 means the patient had a record for atrial fibrillation in the prior year and 0 means they did not |
| HORMONAL.CONTRACEPTIVES.in.prior.year | integer | A binary column where 1 means the patient had a record for a drug in the category hormonal contraceptives in the prior year and 0 means they did not |
| Any.cancer..excl..prostate.cancer.and.benign.cancer..in.prior.year | integer | A binary column where 1 means the patient had a record for cancer excluding prostate and benign cancers in the prior year and 0 means they did not |
| Acute.Kidney.Injury..AKI..in.prior.year | integer | A binary column where 1 means the patient had a record for acute kidney injury in the prior year and 0 means they did not |
| Chronic.kidney.disease.or.end.stage.renal.disease.in.prior.year | integer | A binary column where 1 means the patient had a record for chronic kidney disease in the prior year and 0 means they did not |
| Heart.failure.in.prior.year | integer | A binary column where 1 means the patient had a record for heart failure in the prior year and 0 means they did not |
| Chronic.obstructive.pulmonary.disease..COPD..in.prior.year | integer | A binary column where 1 means the patient had a record for chronic obstructive pulmonary disease in the prior year and 0 means they did not |
| Coronary.artery.disease..CAD..in.prior.year | integer | A binary column where 1 means the patient had a record for coronary artery disease in the prior year and 0 means they did not |
| Major.depressive.disorder..with.NO.occurrence.of.certain.psychiatric.disorder.in.prior.year | integer | A binary column where 1 means the patient had a record for major depressive disorder and no certain psychiatric disorders in the prior year and 0 means they did not |
| Type.1.diabetes.and.no.prior.specific.non.T1DM.diabetes.in.prior.year | integer | A binary column where 1 means the patient had a record for type 1 diabetes in the prior year and 0 means they did not |
| Type.2.Diabetes.Mellitus..DM...with.no.type.1.or.secondary.DM.in.prior.year | integer | A binary column where 1 means the patient had a record for type 2 diabetes in the prior year and 0 means they did not |
| Deep.Vein.Thrombosis..DVT..in.prior.year | integer | A binary column where 1 means the patient had a record for deep vein thrombosis in the prior year and 0 means they did not |
| Dyspnea.in.prior.year | integer | A binary column where 1 means the patient had a record for dyspnea in the prior year and 0 means they did not |
| Edema.in.prior.year | integer | A binary column where 1 means the patient had a record for edema in the prior year and 0 means they did not |
| Gastroesophageal.reflux.disease.in.prior.year | integer | A binary column where 1 means the patient had a record for gastroesophageal reflux in the prior year and 0 means they did not |
| Acute.gastrointestinal..GI..bleeding.in.prior.year | integer | A binary column where 1 means the patient had a record for acute gastrointestinal bleeding in the prior year and 0 means they did not |
| Heart.valve.disorder.in.prior.year | integer | A binary column where 1 means the patient had a record for heart valve disorder in the prior year and 0 means they did not |
| Chronic.hepatitis.in.prior.year | integer | A binary column where 1 means the patient had a record for chronic hepatitis in the prior year and 0 means they did not |
| Hyperlipidemia.in.prior.year | integer | A binary column where 1 means the patient had a record for hyperlipidemia in the prior year and 0 means they did not |
| Hypertension.in.prior.year | integer | A binary column where 1 means the patient had a record for hypertension in the prior year and 0 means they did not |
| Hypothyroidism.in.prior.year | integer | A binary column where 1 means the patient had a record for hypothyroidism in the prior year and 0 means they did not |
| Inflammatory.Bowel.Disease.in.prior.year | integer | A binary column where 1 means the patient had a record for inflammatory bowel disease in the prior year and 0 means they did not |
| Low.back.pain.in.prior.year | integer | A binary column where 1 means the patient had a record for low back pain in the prior year and 0 means they did not |
| Occurrence.of.neuropathy.in.prior.year | integer | A binary column where 1 means the patient had a record for neuropathy in the prior year and 0 means they did not |
| Obesity.in.prior.year | integer | A binary column where 1 means the patient had a record for obesity in the prior year and 0 means they did not |
| Opioids.in.prior.year | integer | A binary column where 1 means the patient had a record for an opioid in the prior year and 0 means they did not |
| Osteoporosis.in.prior.year | integer | A binary column where 1 means the patient had a record for osteoporosis in the prior year and 0 means they did not |
| Peripheral.vascular.disease.in.prior.year | integer | A binary column where 1 means the patient had a record for peripheral vascular disease in the prior year and 0 means they did not |
| Pneumonia.in.prior.year | integer | A binary column where 1 means the patient had a record for pneumonia in the prior year and 0 means they did not |
| Psychotic.disorder.in.prior.year | integer | A binary column where 1 means the patient had a record for a psychotic disorder in the prior year and 0 means they did not |
| Acute.Respiratory.failure.in.prior.year | integer | A binary column where 1 means the patient had a record for acute respiratory failure in the prior year and 0 means they did not |
| Rheumatoid.Arthritis.in.prior.year | integer | A binary column where 1 means the patient had a record for rheumatoid arthritis in the prior year and 0 means they did not |
| Seizure.in.prior.year | integer | A binary column where 1 means the patient had a record for a seizure in the prior year and 0 means they did not |
| Sepsis.in.prior.year | integer | A binary column where 1 means the patient had a record for sepsis in the prior year and 0 means they did not |
| Skin.ulcer.in.prior.year | integer | A binary column where 1 means the patient had a record for a skin ulcer in the prior year and 0 means they did not |
| Sleep.apnea.in.prior.year | integer | A binary column where 1 means the patient had a record for sleep apnea in the prior year and 0 means they did not |
| Smoking.in.prior.year | integer | A binary column where 1 means the patient had a record for smoking in the prior year and 0 means they did not |
| STEROIDS.in.prior.year | integer | A binary column where 1 means the patient had a record for any steroid in the prior year and 0 means they did not |
| Hemorrhagic.stroke.in.an.inpatient.setting.in.prior.year | integer | A binary column where 1 means the patient had a record for hemorrhagic stroke in the prior year and 0 means they did not |
| Non.hemorrhagic.Stroke.in.an.inpatient.setting.in.prior.year | integer | A binary column where 1 means the patient had a record for non-hemorrhagic stroke in the prior year and 0 means they did not |
| Urinary.tract.infectious.disease.in.prior.year | integer | A binary column where 1 means the patient had a record for urinary tract infection in the prior year and 0 means they did not |
| Antibiotics.Carbapenems.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class carbapenems in the prior year and 0 means they did not |
| Antibiotics.Aminoglycosides.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class aminoglycosides in the prior year and 0 means they did not |
| Antibiotics.Cephalosporins.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class cephalosporins in the prior year and 0 means they did not |
| Antibiotics.Fluoroquinolones.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class Fluoroquinolones in the prior year and 0 means they did not |
| Antibiotics.Glycopeptides.and.lipoglycopeptides.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class glycopeptides and lipoglycopeptides in the prior year and 0 means they did not |
| Antibiotics.Macrolides.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class macrolides in the prior year and 0 means they did not |
| Antibiotics.Monobactams.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class monobactams in the prior year and 0 means they did not |
| Antibiotics.Oxazolidinones.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class oxazolidinones in the prior year and 0 means they did not |
| Antibiotics.Penicillins.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class penicillins in the prior year and 0 means they did not |
| Antibiotics.Polypeptides.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class polypeptides in the prior year and 0 means they did not |
| Antibiotics.Rifamycins.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class carbapenems in the prior year and 0 means they did not |
| Antibiotics.Sulfonamides.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class sulfonamides in the prior year and 0 means they did not |
| Antibiotics.Streptogramins.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class streptogramins in the prior year and 0 means they did not |
| Antibiotics.Tetracyclines.in.prior.year | integer | A binary column where 1 means the patient had a record for an antibiotic in the class tetracyclines in the prior year and 0 means they did not |
| predicted.risk.of.Pulmonary.Embolism | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having pulmonary embolism given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Sudden.Hearing.Loss..No.congenital.anomaly.or.middle.or.inner.ear.conditions | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having sudden hearing loss given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Restless.Leg.Syndrome | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having restless leg syndrome given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Sudden.Vision.Loss..with.no.eye.pathology.causes | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having sudden vision loss given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Muscle.weakness.or.injury | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having muscle weakness or injury given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Ankylosing.Spondylitis | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having ankylosing spondylitis given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Autoimmune.hepatitis | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having autoimmune hepatitis given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Multiple.Sclerosis | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having multiple sclerosis given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Acute.pancreatitis..with.No.chronic.or.hereditary.or.common.causes.of.pancreatitis | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having acute pancreatitis given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Ulcerative.colitis | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having ulcerative colitis given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Migraine | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having a migraine given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Dementia | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having dementia given their features (0 = 0% and 1= 100%) |
| predicted.risk.of..Treatment.resistant.depression..TRD. | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having treatment resistant depression given their features (0 = 0% and 1= 100%) |
| predicted.risk.of.Parkinson.s.disease..inpatient.or.with.2nd.diagnosis | numeric | A value between 0 and 1 corresponding to the patient's predicted 1-year risk of having Parkinson's disease given their features (0 = 0% and 1= 100%) |
jmcastagnetto commented
@jreps Is there a published article (or URL) with more information on this dataset?. I am asking because I would like to consider using it for teaching but will need a reference so it can correctly attributed.
Thanks in advance.
jonthegeek commented
Thanks! Closed via #634.