Pinned Repositories
bam_cov_util
Utility tools to handle coverage data in bam files
bioconda-recipes
Conda recipes for the bioconda channel.
carrierseq
a sequence analysis workflow for low-input nanopore sequencing
CheckMeta
CheckMeta is a method to check comprehensiveness of whole meta-genome shotgun data.
cycle_finder
De novo repeat-finding tool for short reads
Hi-Cluster
scripts for cow rumen meta-genome analysis
MetaPlatanus
De novo metagenome assembler
Platanus_B
De novo genome assembler for bacterial genomes
Platanus_read_correction
Error correction tool for Illumina or HiFi reads. Derived from the early version of Platanus (v1.0, written in C lang.).
GreenHill
De novo chromosome-level scaffolding and phasing tool using Hi-C
rkajitani's Repositories
rkajitani/MetaPlatanus
De novo metagenome assembler
rkajitani/Platanus_B
De novo genome assembler for bacterial genomes
rkajitani/cycle_finder
De novo repeat-finding tool for short reads
rkajitani/bam_cov_util
Utility tools to handle coverage data in bam files
rkajitani/bioconda-recipes
Conda recipes for the bioconda channel.
rkajitani/carrierseq
a sequence analysis workflow for low-input nanopore sequencing
rkajitani/CheckMeta
CheckMeta is a method to check comprehensiveness of whole meta-genome shotgun data.
rkajitani/cohesin_analysis
Tools for cohesin-related analysis
rkajitani/DBG_split
rkajitani/Hi-Cluster
scripts for cow rumen meta-genome analysis
rkajitani/Platanus_read_correction
Error correction tool for Illumina or HiFi reads. Derived from the early version of Platanus (v1.0, written in C lang.).
rkajitani/df_utils
Utilities for data frames (tsv/csv files with header)
rkajitani/dotfiles
Configuration files for UNIX
rkajitani/fasta_utils
Utilities for FASTA files
rkajitani/gap_closing_utils
Utility tools for gap-closing (mainly for TGS-GapCloser)
rkajitani/genome_kmer_pipeline
Pipeline to analyze genomic short-read data, especially for heterozygosity.
rkajitani/GFF3_UTR_extender
Utility scripts to add UTR information to CDS-only GFF3 files.
rkajitani/gff_utils
Utilities to handle GFF files
rkajitani/hic_scf_utils
Utility tools for Hi-C scaffolding
rkajitani/iTOL_inputs
this is repository for sharing itol input files.
rkajitani/NetworkGraphMaker
rkajitani/NextPolish
Fast and accurately polish the genome generated by long reads.
rkajitani/paf_utils
Utilities for PAF files
rkajitani/psl_utils
Utilities for PSL files
rkajitani/training_bioinfo
Workspace for bioinformatics training
rkajitani/tsv_utils
Utility tools for TSV files.