rmorenoayala

rmorenoayala's Stars

• d3/d3

  Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

  Language:Shell109k3.6k2.2k22.9k

• cxli233/FriendsDontLetFriends

  Friends don't let friends make certain types of data visualization - What are they and why are they bad.

  Language:R6.3k1117228

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k1554.5k588

• YuLab-SMU/clusterProfiler

  :bar_chart: A universal enrichment tool for interpreting omics data

  Language:R1k45638253

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook9311850112

• agshumate/Liftoff

  An accurate GFF3/GTF lift over pipeline

  Language:Python427715552

• Teichlab/scg_lib_structs

  Collections of library structure and sequence of popular single cell genomic methods

  Language:HTML420311387

• rambaut/figtree

  Automatically exported from code.google.com/p/figtree

  Language:Java38418198104

• galaxyproject/training-material

  A collection of Galaxy-related training material

  Language:HTML30453895893

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++280143828

• wdecoster/nanopack

  An overview of all nanopack tools

  Language:Python20791214

• dfguan/purge_dups

  haplotypic duplication identification tool

  Language:C205914320

• diyelectromusic/sdemp

  Simple DIY Electronic Music Projects

  Language:C++19913232

• lbcb-sci/herro

  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

  Language:Rust184154111

• wdecoster/cramino

  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads

  Language:Rust12462211

• pachterlab/seqspec

  machine-readable file format for genomic library sequence and structure

  Language:Python10972517

• informationsea/transanno

  accurate LiftOver tool for new genome assemblies

  Language:Rust1065911

• gbouras13/hybracter

  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.

  Language:Python952368

• MaestSi/MetONTIIME

  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework

  Language:Nextflow76510717

• COMBINE-lab/oarfish

  long read RNA-seq quantification

  Language:Rust66592

• tidyomics/tidyomics

  Easily install and load packages from the tidyomcis ecosystem

  Language:R604180

• gbouras13/plassembler

  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates

  Language:Python501173

• skovaka/uncalled4

  Language:Python433284

• rki-mf1/clean

  A nextflow pipeline for decontamination of short reads, long reads and contigs

  Language:Nextflow306513

• gbouras13/pypolca

  Standalone Python re-implementation of the POLCA polisher from MaSuRCA

  Language:Python25161

• 123xiaochen/VCFshiny

  Language:HTML24166

• DavidsonGroup/flexiplex

  The Flexible Demultiplexer

  Language:C++232272

• vinuesa/TIB-filoinfo

  Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

  Language:Shell20105

• carpentries-incubator/snakemake-novice-bioinformatics

  Introduction to Snakemake for Bioinformatics

  Language:Python176609

• Rob-murphys/ribdif

  Can individual species be differentiated by amplicon sequencing?

  Language:Python5100