/2022-ABPS-fNIRS-Demo

Demonstrate fNIRS processing with NIRSport2 device

Primary LanguageJupyter NotebookMIT LicenseMIT

2022 ABPS fNIRS Demo

fNIRS processing with NIRSport2 device at the Australasian Brain & Psychological Sciences Meeting 2022.

Aim

We will take a measurement and go from raw data to average waveforms and topographic GLM results.

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Usage

The project has three components:

  • montage: Contains the NIRSport2/Aurora files for the montage used in this demo.
  • experiment: Contains a python script to run the example experiment, including sending triggers via the cedrus usb to parallel converter.
  • analysis: Contains analysis scripts for both waveform and GLM style analysis. We will use these to kick start the conversation.

Installation

Running The Experiment

  1. Install poetry
  2. Move to the directory 
    cd /path/to/2022-ABPS-fNIRS-Demo
  3. Install requirements 
    poetry install
  4. Run the experiment and specify the required parameters 
    poetry run python experiment/experiment.py  --subject Rob --session test --run 1

Running The Analysis

  1. Install MNE using the method recommended at https://mne.tools/stable/install/index.html
  2. Run Jupyter Lab 
    jupyter lab
  3. Move to the analysis directory and launch the relevant notebook
  4. Change the path to your data