rob-p
Working on algorithms, data structures and inference for high-throughput genomics (and other things I find interesting). I prefer my types static!
University of MarylandCollege Park, MD
Pinned Repositories
bibget
Generate BibTex entry from a DOI. Written in Rust and based on the doi2bib crate.
BooM
A hash map using the BooPHF perfect hash function
cargo-sanitize
carlworld-beamer-slide-theme
Carl Compliant Beamer slide theme
CMSC858D
Feature rich Jekyll template for academic course websites
cpp11fun
A small set of examples demonstrating features of C++11
CSE549F17
FQFeeder
Self-contained, multi-threaded fasta/q parser
mcflow
An implementation of implicit curvature flow as described in "Implicit Fairing of Irregular Meshes using Diffusion and Curvature Flow" by Desbrun et al.
ScalaIntro
A small set of Scala examples & links for a brief Scala introduction given at UMD
rob-p's Repositories
rob-p/carlworld-beamer-slide-theme
Carl Compliant Beamer slide theme
rob-p/ScalaIntro
A small set of Scala examples & links for a brief Scala introduction given at UMD
rob-p/dot-emacs
My .emacs file and related elisp plugins
rob-p/epi
A computer scientist's text editor.
rob-p/PARANA2
Parsimonious Ancestral Reconstruction And Network Analysis
rob-p/Powermacs
A collection of useful functions for Emacs
rob-p/scala-utils
A random assortment of utilities for the Scala Language that I use in my projects
rob-p/slimgraph
A graph library for scala
rob-p/xsbt-proguard-plugin
A plugin for XSBT to facilitate the use of ProGuard to create single jars for XSBT-managed projects
rob-p/Jellyfish
Fork of the jellyfish kmer counter. Here is the description copied from their site: JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish stats" command. See the documentation below for more details.
rob-p/Pythy
Having it all now: Pythy syntax for C++11