No results when using Crossref
santoshbs opened this issue · 4 comments
santoshbs commented
Session Info
setting value
version R version 4.0.2 (2020-06-22)
os Pop!_OS 20.10
system x86_64, linux-gnu
ui RStudio
language en_US:en
collate en_US.UTF-8
ctype en_US.UTF-8
tz Europe/Lyon
date 2021-04-28
─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
package * version date lib source
aRxiv 0.5.19 2019-08-08 [1] CRAN (R 4.0.2)
assertthat 0.2.1 2019-03-21 [3] CRAN (R 4.0.1)
backports 1.1.8 2020-06-17 [3] CRAN (R 4.0.2)
blob 1.2.1 2020-01-20 [3] CRAN (R 4.0.1)
cachem 1.0.4 2021-02-13 [1] CRAN (R 4.0.2)
callr 3.6.0 2021-03-28 [1] CRAN (R 4.0.2)
cli 2.4.0 2021-04-05 [1] CRAN (R 4.0.2)
colorspace 1.4-1 2019-03-18 [3] CRAN (R 4.0.1)
crayon 1.4.1 2021-02-08 [1] CRAN (R 4.0.2)
crul 1.1.0 2021-02-15 [1] CRAN (R 4.0.2)
curl 4.3 2019-12-02 [3] CRAN (R 4.0.1)
DBI 1.1.0 2019-12-15 [3] CRAN (R 4.0.1)
desc 1.3.0 2021-03-05 [1] CRAN (R 4.0.2)
devtools 2.4.0 2021-04-07 [1] CRAN (R 4.0.2)
digest 0.6.25 2020-02-23 [3] CRAN (R 4.0.1)
dplyr 1.0.5 2021-03-05 [1] CRAN (R 4.0.2)
DT 0.15 2020-08-05 [3] CRAN (R 4.0.2)
ellipsis 0.3.1 2020-05-15 [3] CRAN (R 4.0.1)
fansi 0.4.2 2021-01-15 [1] CRAN (R 4.0.2)
fastmap 1.0.1 2019-10-08 [3] CRAN (R 4.0.1)
fs 1.5.0 2020-07-31 [1] CRAN (R 4.0.2)
fulltext * 1.7.0 2021-02-13 [1] CRAN (R 4.0.2)
generics 0.1.0 2020-10-31 [1] CRAN (R 4.0.2)
ggplot2 3.3.2 2020-06-19 [3] CRAN (R 4.0.2)
glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.2)
gtable 0.3.0 2019-03-25 [3] CRAN (R 4.0.1)
hoardr 0.5.2 2018-12-02 [1] CRAN (R 4.0.2)
htmltools 0.5.0 2020-06-16 [3] CRAN (R 4.0.2)
htmlwidgets 1.5.1 2019-10-08 [3] CRAN (R 4.0.1)
httpcode 0.3.0 2020-04-10 [1] CRAN (R 4.0.2)
httpuv 1.5.4 2020-06-06 [3] CRAN (R 4.0.2)
jsonlite 1.7.2 2020-12-09 [1] CRAN (R 4.0.2)
later 1.1.0.1 2020-06-05 [3] CRAN (R 4.0.1)
lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2)
lubridate 1.7.9 2020-06-08 [3] CRAN (R 4.0.1)
magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.0.2)
memoise 2.0.0 2021-01-26 [1] CRAN (R 4.0.2)
microdemic 0.6.0 2020-11-20 [1] CRAN (R 4.0.2)
mime 0.10 2021-02-13 [1] CRAN (R 4.0.2)
miniUI 0.1.1.1 2018-05-18 [3] CRAN (R 4.0.1)
munsell 0.5.0 2018-06-12 [3] CRAN (R 4.0.1)
pillar 1.6.0 2021-04-13 [1] CRAN (R 4.0.2)
pkgbuild 1.2.0 2020-12-15 [1] CRAN (R 4.0.2)
pkgconfig 2.0.3 2019-09-22 [3] CRAN (R 4.0.1)
pkgload 1.2.1 2021-04-06 [1] CRAN (R 4.0.2)
plyr 1.8.6 2020-03-03 [1] CRAN (R 4.0.2)
prettyunits 1.1.1 2020-01-24 [3] CRAN (R 4.0.1)
processx 3.5.1 2021-04-04 [1] CRAN (R 4.0.2)
promises 1.1.0 2019-10-04 [3] CRAN (R 4.0.1)
ps 1.6.0 2021-02-28 [1] CRAN (R 4.0.2)
purrr 0.3.4 2020-04-17 [3] CRAN (R 4.0.1)
R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.2)
rappdirs 0.3.3 2021-01-31 [1] CRAN (R 4.0.2)
Rcpp 1.0.6 2021-01-15 [1] CRAN (R 4.0.2)
rcrossref 1.1.0 2020-10-02 [1] CRAN (R 4.0.2)
remotes 2.3.0 2021-04-01 [1] CRAN (R 4.0.2)
rentrez 1.2.3 2020-11-10 [1] CRAN (R 4.0.2)
reshape2 1.4.4 2020-04-09 [1] CRAN (R 4.0.2)
rlang 0.4.10 2020-12-30 [1] CRAN (R 4.0.2)
rplos 1.0.0 2021-02-23 [1] CRAN (R 4.0.2)
rprojroot 1.3-2 2018-01-03 [3] CRAN (R 4.0.1)
scales 1.1.1 2020-05-11 [3] CRAN (R 4.0.1)
sessioninfo 1.1.1 2018-11-05 [3] CRAN (R 4.0.1)
shiny 1.4.0.2 2020-03-13 [3] CRAN (R 4.0.1)
solrium 1.1.4 2019-11-02 [1] CRAN (R 4.0.2)
storr 1.2.5 2020-12-01 [1] CRAN (R 4.0.2)
stringi 1.4.6 2020-02-17 [3] CRAN (R 4.0.2)
stringr 1.4.0 2019-02-10 [3] CRAN (R 4.0.1)
testthat 3.0.2 2021-02-14 [1] CRAN (R 4.0.2)
tibble 3.1.1 2021-04-18 [1] CRAN (R 4.0.2)
tidyselect 1.1.0 2020-05-11 [3] CRAN (R 4.0.1)
triebeard 0.3.0 2016-08-04 [1] CRAN (R 4.0.2)
urltools 1.7.3 2019-04-14 [1] CRAN (R 4.0.2)
usethis 2.0.1 2021-02-10 [1] CRAN (R 4.0.2)
utf8 1.2.1 2021-03-12 [1] CRAN (R 4.0.2)
vctrs 0.3.7 2021-03-29 [1] CRAN (R 4.0.2)
whisker 0.4 2019-08-28 [3] CRAN (R 4.0.1)
withr 2.4.2 2021-04-18 [1] CRAN (R 4.0.2)
XML 3.99-0.5 2020-07-23 [3] CRAN (R 4.0.2)
xml2 1.3.2 2020-04-23 [3] CRAN (R 4.0.1)
xtable 1.8-4 2019-04-21 [3] CRAN (R 4.0.1)
[1] /home/user1/R/x86_64-pc-linux-gnu-library/4.0
[2] /usr/local/lib/R/site-library
[3] /usr/lib/R/site-library
[4] /usr/lib/R/library
When I execute this code, I get the message below. Nothing happens even after many minutes:
library(fulltext)
Sys.setenv(CROSSREF_EMAIL= 'myemail@gmail.com')
(res= ft_search(query= 'biology',
from = 'crossref',
limit= 25,
verbose= TRUE,
crossrefopts = list(filter = c(has_abstract = TRUE))))
* Trying 208.254.38.72:443...
* TCP_NODELAY set
* Connected to api.crossref.org (208.254.38.72) port 443 (#1)
* ALPN, offering h2
* ALPN, offering http/1.1
* successfully set certificate verify locations:
* CAfile: /etc/ssl/certs/ca-certificates.crt
CApath: /etc/ssl/certs
* SSL connection using TLSv1.3 / TLS_AES_256_GCM_SHA384
* ALPN, server did not agree to a protocol
* Server certificate:
* subject: CN=*.crossref.org
* start date: Mar 13 00:00:00 2020 GMT
* expire date: May 16 12:00:00 2022 GMT
* subjectAltName: host "api.crossref.org" matched cert's "*.crossref.org"
* issuer: C=US; O=DigiCert Inc; OU=www.digicert.com; CN=GeoTrust RSA CA 2018
* SSL certificate verify ok.
> GET /works?query=biology&filter=has-license%3Atrue%2Chas-abstract%3Atrue&offset=0&rows=25 HTTP/1.1
Host: api.crossref.org
Accept-Encoding: gzip, deflate
Accept: application/json, text/xml, application/xml, */*
User-Agent: r-curl/4.3 crul/1.1.0 rOpenSci(rcrossref/1.1.0)
X-USER-AGENT: r-curl/4.3 crul/1.1.0 rOpenSci(rcrossref/1.1.0)
* old SSL session ID is stale, removing
sckott commented
I get the same problem, the request just hangs for a long time
I think it's the has-abstract
filter that's the problem. Will have a look
sckott commented
opened an issue https://gitlab.com/crossref/issues/-/issues/1254
sckott commented
@santoshbs they said it should get faster soon, in a few weeks https://gitlab.com/crossref/issues/-/issues/1254#note_590494898
maelle commented
This repository is about to be archived.
If you develop a related package, it might be in scope for https://ropensci.org/software-review/