get Ramilowski2015 interaction dataset from omnipath

[jinyuanchun]

Hi thanks for a great package! i question is how to get Ramilowski2015 interaction dataset from omnipath?
thank you for your help!

[deeenes]

Hi,

There are three ways to get this resource:

1. From the OmniPath interactions database:

library(OmnipathR)

rami <- import_omnipath_interactions(resources = 'Ramilowski2015')

2. Use also the OmniPath intercell database for ligand and receptor annotations:

library(OmnipathR)

rami <- import_intercell_network(
    interactions_param = list(resources = 'Ramilowski2015'),
    transmitter_param = list(resources = 'Ramilowski2015', parent = 'ligand'),
    receiver_param = list(resources = 'Ramilowski2015', parent = 'receptor')
)

3. Downloading directly from the Ramilowski 2015 paper:

library(OmnipathR)

rami <- ramilowski_download()

The latest table will be exactly as it is in the paper, without any processing, which makes it slightly more difficult to work with.

Best,

Denes