saezlab/cosmosR

Issues

• Inquiry on Gene ID Handling and Recognition in COSMOS Analysis by PKN

  #36 opened 3 months ago by transform66
  7

• test

  #39 opened 3 months ago by adugourd
  0

• Node names and annotations

  #38 opened 4 months ago by CatherM
  0

• CBC version

  #37 opened 4 months ago by an-altosian
  4

• Switching to Gurobi solver for running COSMOS

  #31 opened 4 months ago by SwagatikaSahoo2023
  3

• metabolic IDs seem to be inconsistent

  #21 opened 4 months ago by gabora
  1

• different Metabolite annotation in the PKN

  #32 opened a year ago by jtorrejon81
  1

• Integrate Phosphoproteomics and transcriptomics studies

  #34 opened 8 months ago by Kriti1594
  0

• Use of lipidomics data on Cosmos

  #30 opened a year ago by narmadabc
  3

• Inclusion of inhibitory reactions in Recon and metabolite consumption

  #33 opened a year ago by narmadabc
  1

• error in Check Pertubations

  #29 opened a year ago by narmadabc
  7

• Problem with knitr package

  #28 opened a year ago by SwagatikaSahoo2023
  3

• Is it possible to run COSMOS without metabolic data?

  #22 opened 2 years ago by kaupuks
  2

• Running COSMOS with transcriptomics and phosphoproteomics

  #18 opened 2 years ago by Eirinits
  3

• Error while running COSMOS tutorial in R

  #19 opened 2 years ago by dilipgosar
  4

• Saving results... Error in file(file, "rt") : cannot open the connection

  #17 opened 3 years ago by wmoldham
  15

• Problem running cosmos with toy datasets and cbc solver

  #15 opened 3 years ago by sarahbonnin
  7

• cosmosR for mouse and PKN

  #13 opened 3 years ago by anu-bioinfo
  1

• Getting more information on how to use COSMOS

  #8 opened 3 years ago by LonnekeNouwen
  8

• problem installing from github on windows

  #5 opened 4 years ago by adugourd
  1

• Problem running BACKWARD run of COSMOS

  #7 opened 4 years ago by samuelbunga
  1

• problem with preprocess_COSMOS_signaling_to_metabolism

  #6 opened 4 years ago by jytan01
  2