GeneA_GeneB gene expression level error
Closed this issue · 2 comments
alecdavi commented
Hello,
Thank you really much for this package, it is extremely useful and pleasant to use.
I seem to be experiencing an issue when running li.mt.rankaggregate
on a single cell sample. Both Gene_A
and Gene-B
are not expressed in a specific cell type, but I get strong scores for the LR pair Gene_C -> Gene_A_Gene_B
. I am not sure where the Gene_A_Gene_B
expression comes from and what causes this. Maybe you would have an idea ?
dbdimitrov commented
Hi @alecdavi,
Is it possible to share a subset of your data? Or at least the code that you're running?
Thanks!
Daniel
dbdimitrov commented
PS. I assume you might be using the .raw
of your data, instead of the X