saezlab/liana-py

Issue with orthologue conversion

Closed this issue · 2 comments

chrika2 commented

Hi,

I encounter an issue when i try to convert the genes to from human to zebrafish orthologues with HCOP within LIANA in a jupyter notebook. Error mentions: AttributeError: module 'liana.resource' has no attribute 'get_hcop_orthologs'.

Any suggestions what might be the problem?

dbdimitrov commented

Hi @chrika2,

I would assume that you are likely running an older version of liana.
Please run pip install liana --upgrade and let me know if this solves your issue.

Daniel

chrika2 commented

Great that did the trick i missed the update,thank you very much!

Christos

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