upgrade Normaliz to 3.8.8, PyNormaliz to 2.12, add script package libnauty
videlec opened this issue · 204 comments
Tarballs: see checksums.ini
These new releases include dynamic bitset classes that allow dynamic h-representation computations.
We also install nauty header and library in order that Normaliz compile with nauty support (for computing automorphism group).
Depends on #30262
Upstream: Fixed upstream, but not in a stable release.
CC: @mkoeppe @jplab @isuruf @w-bruns @tscrim @kliem @LaisRast @slel
Component: packages: standard
Keywords: package upgrade days101
Author: Vincent Delecroix, Jonathan Kliem, Matthias Koeppe
Branch: c55a701
Reviewer: Jonathan Kliem, Matthias Koeppe
Issue created by migration from https://trac.sagemath.org/ticket/27952
Branch: u/vdelecroix/normaliz
Description changed:
---
+++
@@ -1,4 +1,4 @@
Tarballs
- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.7.3/normaliz-3.7.3.tar.gz
-- PyNormaliz: ?
+- PyNormaliz: https://files.pythonhosted.org/packages/b3/2a/6bf3717ff75f4b6dd8cbcba3dffdf75e65162c7aaad4ff95a64b4a768e7e/PyNormaliz-2.7.tar.gzChanged keywords from none to package upgrade
Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:
7b7168b | upgrade normaliz to 3.7.3 and PyNormaliz to 2.7 |
Author: Vincent Delecroix
Description changed:
---
+++
@@ -1,4 +1,4 @@
Tarballs
- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.7.3/normaliz-3.7.3.tar.gz
-- PyNormaliz: https://files.pythonhosted.org/packages/b3/2a/6bf3717ff75f4b6dd8cbcba3dffdf75e65162c7aaad4ff95a64b4a768e7e/PyNormaliz-2.7.tar.gz
+Description changed:
---
+++
@@ -1,4 +1,4 @@
Tarballs
- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.7.3/normaliz-3.7.3.tar.gz
-
+- PyNormaliz: https://files.pythonhosted.org/packages/6b/92/f0074f58dc8a36529b374e3b18a7f21557bf113fb3480bb3d327d4fc5a2f/PyNormaliz-2.8.tar.gzDescription changed:
Self tests do not pass on my computer
$ python3 setup.py test
/opt/sage/sage-py3-gcc/local/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type'
warnings.warn(msg)
running test
Doctest must_be_matrices-39.txt
2 tests
Doctest test_rational_cones.txt
34 tests
Doctest segfault-45.txt
3 tests
Doctest autom.txt
Doctest failures
And I confirm the segfault in a Python3 console
$ python3
Python 3.7.3 (default, May 26 2019, 12:00:16)
[GCC 8.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from PyNormaliz import Cone, NmzCone, NmzResult
>>> V = [[-1, -1, 1], [-1, 0, 1], [-1, 1, 1], [0, -1, 1], [0, 0, 1], [0, 1, 1], [1, -1, 1], [1, 0, 1], [1, 1, 1]]
>>> cube2 = NmzCone(vertices=V)
>>> NmzResult(cube2,"Automorphisms") == [8, [[[], []], []], [[[0, 2, 1, 3], [1, 0, 3, 2]], [[0, 1, 2, 3]]], [[[1, 0, 3, 2], [0, 2, 1, 3]], [[0, 1, 2, 3]]]]
Erreur de segmentation (core dumped)
Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:
72af741 | normaliz 3.7.3 upgrade / PyNormaliz 2.8 upgrade |
Description changed:
---
+++
@@ -1,4 +1,5 @@
Tarballs
+- e-antic: TO COME
- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.7.3/normaliz-3.7.3.tar.gz
- PyNormaliz: https://files.pythonhosted.org/packages/6b/92/f0074f58dc8a36529b374e3b18a7f21557bf113fb3480bb3d327d4fc5a2f/PyNormaliz-2.8.tar.gzsegfault probably due to e-antic version. I am about to release 0.1.3
Most probably, the segfault is due to the fact that Normaliz was not built with nauty support
checking whether nauty headers and library are available... checking for densenauty in -lnauty... no
Tickets still needing working or clarification should be moved to the next release milestone at the soonest (please feel free to revert if you think the ticket is close to being resolved).
Description changed:
---
+++
@@ -1,5 +1,4 @@
Tarballs
-- e-antic: TO COME
- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.7.3/normaliz-3.7.3.tar.gz
- PyNormaliz: https://files.pythonhosted.org/packages/6b/92/f0074f58dc8a36529b374e3b18a7f21557bf113fb3480bb3d327d4fc5a2f/PyNormaliz-2.8.tar.gzDescription changed:
---
+++
@@ -2,3 +2,5 @@
- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.7.3/normaliz-3.7.3.tar.gz
- PyNormaliz: https://files.pythonhosted.org/packages/6b/92/f0074f58dc8a36529b374e3b18a7f21557bf113fb3480bb3d327d4fc5a2f/PyNormaliz-2.8.tar.gz
+
+We also install nauty header and library in order that Normaliz compile with nauty support (for computing automorphism group).What's this business with nauty.a? Shouldn't a shared library be built?
If you suceed in doing so, please go on. Nauty makefile is extremly basic.
Changed keywords from package upgrade to package upgrade days101
Debian seems to have an autotoolized build system for nauty.
https://sources.debian.org/patches/nauty/2.5r9+ds-1/
They also do not build shared library as far a I see.
Their "upstream autotoolization.patch " has lib_LTLIBRARIES = libnauty.la ....
Then you are welcome to port their patch to Sage and propose a patch to normaliz!
FWIW: Normaliz 3.7.4 is out and fixes an f-vector issue (that came up with algebraic polytopes). It might be worth to grab this version right away and not wait for another ticket. This newer version should not be a quantum step...
Ticket retargeted after milestone closed
Also we need a version of e-antic that finds Debian's install name of arb, flint-arb.
This seems to be in e-antic master but not in the 0.x branch
(see https://github.com/mkoeppe/sage/runs/430688755?check_suite_focus=true, where Sage recognizes libflint-arb but the e-antic install fails.)
Description changed:
---
+++
@@ -4,3 +4,5 @@
- PyNormaliz: https://files.pythonhosted.org/packages/6b/92/f0074f58dc8a36529b374e3b18a7f21557bf113fb3480bb3d327d4fc5a2f/PyNormaliz-2.8.tar.gz
We also install nauty header and library in order that Normaliz compile with nauty support (for computing automorphism group).
+
+We also patch or upgrade e-antic so that it finds `arb` on Debian (https://github.com/videlec/e-antic/pull/82)Replying to @mkoeppe:
Also we need a version of e-antic that finds Debian's install name of arb,
flint-arb.
This seems to be in e-antic master but not in the 0.x branch
Fixed in merged pull request https://github.com/videlec/e-antic/pull/82; now we only need a new release!
Description changed:
---
+++
@@ -3,6 +3,10 @@
- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.7.3/normaliz-3.7.3.tar.gz
- PyNormaliz: https://files.pythonhosted.org/packages/6b/92/f0074f58dc8a36529b374e3b18a7f21557bf113fb3480bb3d327d4fc5a2f/PyNormaliz-2.8.tar.gz
+These new releases include dynamic bitset classes that allow dynamic h-representation computations.
+
We also install nauty header and library in order that Normaliz compile with nauty support (for computing automorphism group).
-We also patch or upgrade e-antic so that it finds `arb` on Debian (https://github.com/videlec/e-antic/pull/82)
+We also patch e-antic so that it finds `arb` on Debian (https://github.com/videlec/e-antic/pull/82).
+
+Description changed:
---
+++
@@ -1,7 +1,7 @@
Tarballs
-- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.7.3/normaliz-3.7.3.tar.gz
-- PyNormaliz: https://files.pythonhosted.org/packages/6b/92/f0074f58dc8a36529b374e3b18a7f21557bf113fb3480bb3d327d4fc5a2f/PyNormaliz-2.8.tar.gz
+- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.8.4/normaliz-3.8.4.tar.gz
+- PyNormaliz: https://files.pythonhosted.org/packages/a6/4b/43fa5e9a993e683b960ade003918bb5fa2180932fc8ac39daea1364163a8/PyNormaliz-2.10.tar.gz
These new releases include dynamic bitset classes that allow dynamic h-representation computations.
Changed branch from u/vdelecroix/normaliz to u/mkoeppe/normaliz
The challenge with upgrading Normaliz and PyNormaliz one basically has to rewrite _cone_from_Vrepresentation_and_Hrepresentation in backend_normaliz.py (and then pickling fails again), as initialization from precomputed data of normaliz cones works a bit different now.
I have mostly figured out how to do this, I think. So unless someone want to, I would like to take care of that part.
New commits:
b9b8222 | install nauty header and library |
b482276 | normaliz 3.7.3 upgrade / PyNormaliz 2.8 upgrade |
1860af0 | Update Normaliz to 3.8.4, PyNormaliz to 2.10 |
2e1b0e8 | normaliz: Remove dependency on boost_cropped |
3543b73 | Add e-antic patch |
Replying to @kliem:
The challenge with upgrading Normaliz and PyNormaliz one basically has to rewrite
_cone_from_Vrepresentation_and_Hrepresentationinbackend_normaliz.py(and then pickling fails again), as initialization from precomputed data of normaliz cones works a bit different now.I have mostly figured out how to do this, I think. So unless someone want to, I would like to take care of that part.
Sounds good.
I assume you are referring to these kinds of errors:
File "src/sage/geometry/polyhedron/backend_normaliz.py", line 675, in sage.geometry.polyhedron.backend_normaliz.Polyhedron_normaliz._cone_from_Vrepresentation_and_Hrepresentation
Failed example:
cone = P._cone_from_Vrepresentation_and_Hrepresentation(P.vertices(),P.rays(),P.inequalities(),P.equations()) # optional - pynormaliz
Exception raised:
Traceback (most recent call last):
File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-algebraic-2018-spring/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-algebraic-2018-spring/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1123, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.geometry.polyhedron.backend_normaliz.Polyhedron_normaliz._cone_from_Vrepresentation_and_Hrepresentation[2]>", line 1, in <module>
cone = P._cone_from_Vrepresentation_and_Hrepresentation(P.vertices(),P.rays(),P.inequalities(),P.equations()) # optional - pynormaliz
File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-algebraic-2018-spring/local/lib/python3.7/site-packages/sage/geometry/polyhedron/backend_normaliz.py", line 790, in _cone_from_Vrepresentation_and_Hrepresentation
return self._cone_from_normaliz_data(data, verbose=verbose)
File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-algebraic-2018-spring/local/lib/python3.7/site-packages/sage/geometry/polyhedron/backend_normaliz.py", line 414, in _cone_from_normaliz_data
cone = PyNormaliz.NmzCone(**data)
PyNormaliz_cpp.NormalizError: Some error in the normaliz input data detected: Input type not allowed with precomputed data
I will not make further changes at this point.
The branch needs the first part of commit 9dd22ef4f79228fdb9e0e012b98046349922d6fb (from #28799).
Changed author from Vincent Delecroix to Vincent Delecroix, Matthias Koeppe
@w-bruns: I'm having trouble with the new version of normaliz for the following reason:
When initializing a cone from precomputed data, it asks me to specify generated_lattice. However, sometimes we do not have access to this (e.g. when we want to change backends and have never done the computations in normaliz or when combinatorially obtaining the new double description is much cheaper).
How do I obtain generated_lattice from extreme_rays and maximal_subspace? (Or even as a cone property from any normaliz cone).
I'm puzzled for example how I could obtain the 2-dimensional permutahedron e.g.. The following doesn't seem to work:
sage: import PyNormaliz
sage: cone = PyNormaliz.NmzCone(
....: dehomogenization=[[0, 0, 0, 1]],
....: extreme_rays=[
....: [1, 2, 3, 1], [1, 3, 2, 1], [2, 1, 3, 1],
....: [2, 3, 1, 1], [3, 1, 2, 1], [3, 2, 1, 1]],
....: generated_lattice=[[1, 0, -1, 0], [0, 1, -1, 0], [0, 0, 6, 1]],
....: maximal_subspace=[],
....: support_hyperplanes=[
....: [-1, -1, 0, 5], [-1, 0, 0, 3], [0, -1, 0, 3],
....: [0, 1, 0, -1], [1, 0, 0, -1], [1, 1, 0, -3]])
It initializes the empty cone for some reason. (At least Dimension of this thing is -1.)
How do I modify the generated lattice to make this work?
Work Issues: patch e-antic configure
Changed work issues from patch e-antic configure to patch e-antic configure, patch normaliz
Changed author from Vincent Delecroix, Matthias Koeppe to Vincent Delecroix, Jonathan Kliem, Matthias Koeppe
As for the trouble with normaliz 3.8.4:
Winfried Bruns figured out the error, one needs to patch normaliz somehow like this
Add a missing dual in normaliz 3.8.4
diff --git a/source/libnormaliz/cone.cpp b/source/libnormaliz/cone.cpp
index 4e416a75e1..9ba2b2ba40 100644
--- a/source/libnormaliz/cone.cpp
+++ b/source/libnormaliz/cone.cpp
@@ -1034,7 +1034,7 @@ void Cone<Integer>::process_multi_input_inner(map<InputType, vector<vector<Integ
setComputed(ConeProperty::SupportHyperplanes);
size_t test_rank=BasisChangePointed.getRank();
- if( test_rank != BasisChangePointed.to_sublattice(Generators).rank() ||
+ if( test_rank != BasisChangePointed.to_sublattice_dual(Generators).rank() ||
test_rank != BasisChangePointed.to_sublattice_dual(SupportHyperplanes).rank())
throw BadInputException("Precomputed data do not define pointed cone modulo maximal subspace");
create_convex_hull_data();
I couldn't figure out, how to apply this patch though. So I manually changed the tarball and then udpated the checksums. So my last commit is most likely not helpful.
New commits:
2565849 | fixed pickling of normaliz polyhedra |
f40437f | checksum for patched normaliz |
Changed branch from u/mkoeppe/normaliz to u/gh-kliem/normaliz
All tests passing for me.
Changed branch from u/gh-kliem/normaliz to u/mkoeppe/normaliz
I get this (on macOS):
sage -t src/sage/geometry/polyhedron/backend_normaliz.py
**********************************************************************
File "src/sage/geometry/polyhedron/backend_normaliz.py", line 1242, in sage.geometry.polyhedron.backend_normaliz.Polyhedron_normaliz.__setstate__
Failed example:
P1.volume(measure='induced_lattice', engine='normaliz') # optional - pynormaliz
Expected:
96
Got:
0
**********************************************************************
File "src/sage/geometry/polyhedron/backend_normaliz.py", line 1251, in sage.geometry.polyhedron.backend_normaliz.Polyhedron_normaliz.__setstate__
Failed example:
P2 == P # optional - pynormaliz
Expected:
True
Got:
False
**********************************************************************
1 item had failures:
2 of 27 in sage.geometry.polyhedron.backend_normaliz.Polyhedron_normaliz.__setstate__
[317 tests, 2 failures, 2.46 s]
Changed work issues from patch e-antic configure, patch normaliz to none
Work Issues: patch e-antic configure
Vincent, could you make a new e-antic 0.x release?
This means you didn't apply the patch before installing normaliz (?)
Replying to @mkoeppe:
I get this (on macOS):
sage -t src/sage/geometry/polyhedron/backend_normaliz.py ********************************************************************** File "src/sage/geometry/polyhedron/backend_normaliz.py", line 1242, in sage.geometry.polyhedron.backend_normaliz.Polyhedron_normaliz.__setstate__ Failed example: P1.volume(measure='induced_lattice', engine='normaliz') # optional - pynormaliz Expected: 96 Got: 0 ********************************************************************** File "src/sage/geometry/polyhedron/backend_normaliz.py", line 1251, in sage.geometry.polyhedron.backend_normaliz.Polyhedron_normaliz.__setstate__ Failed example: P2 == P # optional - pynormaliz Expected: True Got: False ********************************************************************** 1 item had failures: 2 of 27 in sage.geometry.polyhedron.backend_normaliz.Polyhedron_normaliz.__setstate__ [317 tests, 2 failures, 2.46 s]
The patch was applied in that build:
sage-logger -p 'sage-spkg normaliz-3.8.4' '/Users/mkoeppe/s/sage/sage-rebasing/worktree-algebraic-2018-spring/logs/pkgs/normaliz-3.8.4.log'
[normaliz-3.8.4] Found local metadata for normaliz-3.8.4
[normaliz-3.8.4] Using cached file /Users/mkoeppe/s/sage/sage-rebasing/worktree-algebraic-2018-spring/upstream/normaliz-3.8.4.tar.gz
[normaliz-3.8.4] normaliz-3.8.4
[normaliz-3.8.4] ====================================================
[normaliz-3.8.4] Setting up build directory for normaliz-3.8.4
[normaliz-3.8.4] Finished extraction
[normaliz-3.8.4] Applying patches from ../patches...
[normaliz-3.8.4] Applying ../patches/patch_test_rank.patch
[normaliz-3.8.4] patching file source/libnormaliz/cone.cpp
[normaliz-3.8.4] Hunk #1 succeeded at 1034 with fuzz 2.
This is the same issue that I had and why I said, I couldn't do a patch.
When I manually modified the tarball in upstream and updated the checksums it worked just fine.
Attach your modified tarball please
Sorry, my bad. I used an editor without line numbers, because it is not configured to delete trailing spaces.
This is Winfrieds mail:
An einer Stelle ein _dual vergessen. Ersetze Zeile 4287 in cone.cpp durch
vector HelpDehom=BasisChangePointed.to_sublattice_dual(Dehomogenization);
Winfried
I guess when making the diff file for the patch, I got it wrong. That explains, why the patch was successfully applied but it still didn't work.
I'll push a fix in a second
Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:
586617c | build/pkgs/normaliz: Add compute_recession_rank.patch (from upstream) |
Replying to @kliem:
I guess when making the diff file for the patch, I got it wrong. That explains, why the patch was successfully applied but it still didn't work.
I recommend this procedure: https://doc.sagemath.org/html/en/developer/packaging.html#how-to-maintain-a-set-of-patches
Branch pushed to git repo; I updated commit sha1. New commits:
ab81f9f | Remove changes to Makefile.am (trigger autoreconf) |
This fixes the doctest failures for me.
Changed branch from u/mkoeppe/normaliz to u/gh-kliem/normaliz
How about
-sdh_make
+sdh_make CFLAGS=-fPICDoesn't that overwrite previously configured CFLAGS?
Changed branch from u/gh-kliem/normaliz to u/mkoeppe/normaliz
There are still build failures on various platforms:
ubuntu-trusty:
In file included from ./libnormaliz/list_operations.cpp:31:0,
from libnormaliz/cone_and_control.cpp:31:
./libnormaliz/matrix.h: In function 'libnormaliz::Matrix<Number> libnormaliz::LLL_red(const libnormaliz::Matrix<Number>&, libnormaliz::Matrix<Integer>&, libnormaliz::Matrix<Integer>&)':
./libnormaliz/matrix.h:647:30: error: call of overloaded 'isnan(__gnu_cxx::__alloc_traits<std::allocator<double> >::value_type&)' is ambiguous
if (isnan(M[i][j])) {
ubuntu-{xenial,bionic}-standard, fedora-26-standard etc.:
checking nauty/nauty.h presence... no
checking for nauty/nauty.h... no
configure: error: nauty is not available but was requested
ubuntu-{eoan,focal}-standard, debian-sid-standard etc.:
... renf_elem/.libs/cmp_fmpq.o renf_elem/.libs/floor_ceil.o renf_elem/.libs/gen.o renf_elem/.libs/get_cfrac.o renf_elem/.libs/get_str_pretty.o renf_elem/.libs/init.o renf_elem/.libs/print_pretty.o renf_elem/.libs/randtest.o renf_elem/.libs/set_evaluation.o renf_elem/.libs/set_fmpq_poly.o renf_elem/.libs/sgn.o renf_elem/.libs/get_d.o renf_elem/.libs/get_arb.o renf_elem/.libs/relative_condition_number_2exp.o -L/sage/local/lib -larb -lflint-arb -lflint -lgmp -fopenmp -g -O2 -Wl,-rpath -Wl,/sage/local/lib -fopenmp -Wl,-soname -Wl,libeantic.so.0 -o .libs/libeantic.so.0.0.0
/usr/bin/ld: cannot find -larb
collect2: error: ld returned 1 exit status
make[3]: *** [Makefile:1899: libeantic.la] Error 1
nauty's spkg-configure.m4only looks for the executables, not the library
Replying to @mkoeppe:
There are still build failures on various platforms:
ubuntu-trusty:In file included from ./libnormaliz/list_operations.cpp:31:0, from libnormaliz/cone_and_control.cpp:31: ./libnormaliz/matrix.h: In function 'libnormaliz::Matrix<Number> libnormaliz::LLL_red(const libnormaliz::Matrix<Number>&, libnormaliz::Matrix<Integer>&, libnormaliz::Matrix<Integer>&)': ./libnormaliz/matrix.h:647:30: error: call of overloaded 'isnan(__gnu_cxx::__alloc_traits<std::allocator<double> >::value_type&)' is ambiguous if (isnan(M[i][j])) {
Winfried, do you know about this compile error related to isnan? This is with the ancient gcc on Ubuntu trusty.
Replying to @mkoeppe:
There are still build failures on various platforms:
ubuntu-{eoan,focal}-standard,debian-sid-standardetc.:... renf_elem/.libs/cmp_fmpq.o renf_elem/.libs/floor_ceil.o renf_elem/.libs/gen.o renf_elem/.libs/get_cfrac.o renf_elem/.libs/get_str_pretty.o renf_elem/.libs/init.o renf_elem/.libs/print_pretty.o renf_elem/.libs/randtest.o renf_elem/.libs/set_evaluation.o renf_elem/.libs/set_fmpq_poly.o renf_elem/.libs/sgn.o renf_elem/.libs/get_d.o renf_elem/.libs/get_arb.o renf_elem/.libs/relative_condition_number_2exp.o -L/sage/local/lib -larb -lflint-arb -lflint -lgmp -fopenmp -g -O2 -Wl,-rpath -Wl,/sage/local/lib -fopenmp -Wl,-soname -Wl,libeantic.so.0 -o .libs/libeantic.so.0.0.0 /usr/bin/ld: cannot find -larb collect2: error: ld returned 1 exit status make[3]: *** [Makefile:1899: libeantic.la] Error 1
This will be fixed by https://github.com/videlec/e-antic/pull/85
nauty header file location varies between distributions, Normaliz/Normaliz#332
Branch pushed to git repo; I updated commit sha1. This was a forced push. Last 10 new commits:
5cb779c | Update Normaliz to 3.8.4, PyNormaliz to 2.10 |
4ba88ef | normaliz: Remove dependency on boost_cropped |
cbffb6c | build/pkgs/normaliz: Update configure options |
32906fe | build/pkgs/pynormaliz: Update spkg-check |
5a8205b | fixed pickling of normaliz polyhedra |
c9be0c4 | build/pkgs/normaliz: Add compute_recession_rank.patch (from upstream) |
3a69847 | fixed optional flags; better documentation |
a2112c2 | build/pkgs/nauty/spkg-install: Put -fPIC in CC at connfigure time |
69351ac | Update e-antic to 0.1.5 |
7378372 | Add libnauty script package, dependency for normaliz |
Changed work issues from patch e-antic configure to figure out libnauty configure
Branch pushed to git repo; I updated commit sha1. This was a forced push. Last 10 new commits:
ce78b1b | Update Normaliz to 3.8.4, PyNormaliz to 2.10 |
8061156 | normaliz: Remove dependency on boost_cropped |
fe957a6 | build/pkgs/normaliz: Update configure options |
ec93c82 | build/pkgs/pynormaliz: Update spkg-check |
787c4df | fixed pickling of normaliz polyhedra |
3605788 | build/pkgs/normaliz: Add compute_recession_rank.patch (from upstream) |
63fafd0 | fixed optional flags; better documentation |
bdbd6c9 | build/pkgs/nauty/spkg-install: Put -fPIC in CC at connfigure time |
c6f353b | Update e-antic to 0.1.5 |
efcc1ca | Add libnauty script package, dependency for normaliz |
Rebased on 9.1.beta8
Description changed:
---
+++
@@ -1,5 +1,6 @@
Tarballs
+- e-antic: https://www.labri.fr/perso/vdelecro/e-antic/e-antic-0.1.5.tar.gz
- Normaliz: https://github.com/Normaliz/Normaliz/releases/download/v3.8.4/normaliz-3.8.4.tar.gz
- PyNormaliz: https://files.pythonhosted.org/packages/a6/4b/43fa5e9a993e683b960ade003918bb5fa2180932fc8ac39daea1364163a8/PyNormaliz-2.10.tar.gz
@@ -7,6 +8,3 @@
We also install nauty header and library in order that Normaliz compile with nauty support (for computing automorphism group).
-We also patch e-antic so that it finds `arb` on Debian (https://github.com/videlec/e-antic/pull/82).
-
-