salesforce/progen

Generate sequence based on natural one

avivlazar opened this issue · 3 comments

Hi,
First of all, thank you for sharing ProGen2 code.
I read the article as part of my thesis, and started playing with the model.

My questions:

  1. How may I generate a new sequence by ProGen2 which based on natural sequence?
    For example:
    Natural seq: "DQSVRKLVRKLPDEGLDREKVKTYLDKLGVDREELQKFSDAIGLESSGGS"
    A new generated seq: "GSSDIEITVEGKEQADKVIEEMKRRNLEVHVEEHNGQYIDKASLESSGGS"

  2. In generation process, is it possible to define which station/s in natural sequence I want ProGen2 will change? if yes - how?
    Example: I want to change only the 3rd station in sequence, so:
    Natural seq: "DQSV..."
    Possible generated sequence: "DQGV..."
    So the 3rd station "S" was changed to "G".

Best Regards,
Aviv.

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