Generate sequence based on natural one
avivlazar opened this issue · 3 comments
Hi,
First of all, thank you for sharing ProGen2 code.
I read the article as part of my thesis, and started playing with the model.
My questions:
-
How may I generate a new sequence by ProGen2 which based on natural sequence?
For example:
Natural seq: "DQSVRKLVRKLPDEGLDREKVKTYLDKLGVDREELQKFSDAIGLESSGGS"
A new generated seq: "GSSDIEITVEGKEQADKVIEEMKRRNLEVHVEEHNGQYIDKASLESSGGS" -
In generation process, is it possible to define which station/s in natural sequence I want ProGen2 will change? if yes - how?
Example: I want to change only the 3rd station in sequence, so:
Natural seq: "DQSV..."
Possible generated sequence: "DQGV..."
So the 3rd station "S" was changed to "G".
Best Regards,
Aviv.
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