runDMLQuery on AWS Glue throws an exception because of Jersey libraries conflict

[cheptsov]

When using the runDMLQuery method on AWS Glue, it throws an exception:

18/10/30 23:30:49 WARN ServletHandler: Error for /api/v1/applications/application_1540940741469_0002
java.lang.NoSuchMethodError: javax.ws.rs.core.Application.getProperties()Ljava/util/Map;
at org.glassfish.jersey.server.ApplicationHandler.<init>(ApplicationHandler.java:331)
at org.glassfish.jersey.servlet.WebComponent.<init>(WebComponent.java:392)
at org.glassfish.jersey.servlet.ServletContainer.init(ServletContainer.java:177)
at org.glassfish.jersey.servlet.ServletContainer.init(ServletContainer.java:369)
at javax.servlet.GenericServlet.init(GenericServlet.java:158)
at org.spark_project.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:640)
at org.spark_project.jetty.servlet.ServletHolder.getServlet(ServletHolder.java:496)
at org.spark_project.jetty.servlet.ServletHolder.ensureInstance(ServletHolder.java:788)
at org.spark_project.jetty.servlet.ServletHolder.prepare(ServletHolder.java:773)
at org.spark_project.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:578)
at org.spark_project.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1180)
at org.spark_project.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
at org.spark_project.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1112)
at org.spark_project.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at org.spark_project.jetty.server.handler.gzip.GzipHandler.handle(GzipHandler.java:461)
at org.spark_project.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:213)
at org.spark_project.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:134)
at org.spark_project.jetty.server.Server.handle(Server.java:524)
at org.spark_project.jetty.server.HttpChannel.handle(HttpChannel.java:319)
at org.spark_project.jetty.server.HttpConnection.onFillable(HttpConnection.java:253)
at org.spark_project.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)
at org.spark_project.jetty.io.FillInterest.fillable(FillInterest.java:95)
at org.spark_project.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:93)
at org.spark_project.jetty.util.thread.strategy.ExecuteProduceConsume.executeProduceConsume(ExecuteProduceConsume.java:303)
at org.spark_project.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:148)
at org.spark_project.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:136)
at org.spark_project.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:671)
at org.spark_project.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:589)
at java.lang.Thread.run(Thread.java:748)

In addition to the exception the job freezes for quite a while. I believe this is caused by the conflict of Jersey libraries in the classpath. Any ideas how this could be either solved or workaround-ed?
Thanks in advance.

[samelamin]

Probably best to create an uber jar to include all the dependencies

http://queirozf.com/entries/creating-scala-fat-jars-for-spark-on-sbt-with-sbt-assembly-plugin