Pinned Repositories
bimodalFitter
Find a two component gaussian mixture that fits the given data
bio_tools
my libraries for comp bio
compmut
Compensatory Mutations
cv
latex cv
genecards
Free API for genecards.org
hgnc
HGNC REST API functions for python
kickstart.nvim
A launch point for your personal nvim configuration
pathopredictor
Predict pathogenic and benign missense variant status
snakemake.nvim
Trying to make an nvim plugin
vcfanno_lua
Lua annotation scripts for vcfanno
samesense's Repositories
samesense/pathopredictor
Predict pathogenic and benign missense variant status
samesense/warehouse-beacon
samesense/bam.iobio-docker
Container for https://github.com/chmille4/bam.iobio.io
samesense/beacon-go
AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.
samesense/bioSlackBot
Slack bot for genomic lookups
samesense/broad-prod-wgs-germline-snps-indels
Workflows used in production at Broad for germline short variant discovery in WGS data
samesense/build-harness
🤖Collection of Makefiles to facilitate building Golang projects, Dockerfiles, Helm charts, and more
samesense/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
samesense/dREG-docker-1
samesense/evansjp-dev-box
samesense/explore-dante
samesense/five-dollar-genome-analysis-pipeline
Workflows used for germline short variant discovery in WGS data
samesense/gatk4-data-processing
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
samesense/github_tutorial
A hands on forking, cloning, pulling, pushing, merging tutorial.
samesense/metagenomics-workshop
samesense/parsecnv
samesense/pathogenicity-training-data
Pathogenicity classifiers and their training datasets
samesense/python-ctr
samesense/python-package-dev-docker
Dockerfile to build python packages
samesense/python-spotifork
:fork_and_knife: Fork a Spotify playlist
samesense/python-spotifork-ios
Pythonista scripts for deep copies of spotify playlists
samesense/python-tabcat
Concatenate tab delimited files w/ headers
samesense/quantisnp
Quantisnp files to support docker container
samesense/reveal-md
reveal.js on steroids! Get beautiful reveal.js presentations from any Markdown file
samesense/seq-format-conversion
Workflows for converting between sequence data formats
samesense/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
samesense/snakemake-conda-cromwell
samesense/snakemake-liftover-workflow
samesense/snpeff-docker
Snpeff container for use with snakemake wrapper
samesense/trash