sanger-pathogens/Fastaq

For sequence_trim it is unclear what the format for trim_seqs should be

idwProxima opened this issue · 2 comments

idwProxima commented

Apologies if this is extremely basic, I'm new to sequence data/file manipulations at this level.

I've tried formatting the trim_seqs input file as a fasta, and as a plain text but nothing works. Unless I'm missing something or doing something painfully stupid in my current state of ignorance...

Any help would be appreciated.

bmasoumi commented

I am a newbie so am not sure how much this is going to be helpful. I usually check README.md file available under the Code tab. There is a usage section and there are some examples. Have you checked those? If the usage is correct, then it could be your input file that is not formatted correctly.

idwProxima commented

Hey, thanks for answering.

Yeah I checked the help documentation and it didn't help unfortunately.