satijalab/azimuth-references

Allen Brain atlas reference files have moved to new URL

Closed this issue · 2 comments

tomsing1 commented

It seems that the reference Mouse_M1_10xV3_Matrix.RDS has moved and is no longer available from the URL listed in the Snakemake file:

azimuth-references/mouse_motorcortex/Snakefile

Line 14 in 5f5255d

data_url = "http://data.nemoarchive.org/biccn/grant/lein/lein/2020_M1_study_analysis/Transcriptomics/sncell/10X/mouse/processed/counts/counts/M1/Mouse_M1_10xV3_Matrix.RDS",

tomsing1 commented

I think the new location is:

http://data.nemoarchive.org/publication_release/2020_M1_study_analysis/Transcriptomics/sncell/10X/mouse/processed/counts/counts/M1/

andrewwbutler commented

Thanks for bringing this up and sorry for the slow response. It looks like it's here now:

http://data.nemoarchive.org/publication_release/Lein_2020_M1_study_analysis/Transcriptomics/sncell/10X/mouse/processed/counts/counts/M1/

I've updated the URLs in the master branch to reflect this new location.