scalefreegan's Stars
CountESS-Project/Enrich2-CountESS
Python3 successor to Enrich2.
belbio/pubmed2json
Convert pubmed XML to json and store in ArangoDB
agshumate/Liftoff
An accurate GFF3/GTF lift over pipeline
rvaser/spoa
SIMD partial order alignment tool/library
google/seq2seq
A general-purpose encoder-decoder framework for Tensorflow
EGA-archive/ont2cram
Oxford Nanopore HDF/Fast5 to CRAM conversion tool
adnaniazi/tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
Psy-Fer/SquiggleKit
SquiggleKit: A toolkit for manipulating nanopore signal data
johnomics/tapestry
Validate and edit small eukaryotic genome assemblies
lh3/cgranges
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
BrooksLabUCSC/flair
Full-Length Alternative Isoform analysis of RNA
OValery16/swap-face
Tutorial about the swap-face algorithm
gt1/daccord
d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly
ms-gx/guppy_bcsplit
Split output of Oxford Nanopore's Guppy basecaller output according to barcodes found in sequences
ruanjue/wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
nanoporetech/tombo
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
roblanf/minion_qc
Quality control for MinION sequencing data
rrwick/Deepbinner
a signal-level demultiplexer for Oxford Nanopore reads
wckdouglas/tgirt_map
pipeline for RNA-seq using TGIRT total RNA-seq
jorvis/biocode
Bioinformatics code libraries and scripts
hyeshik/poreplex
A versatile sequenced read processor for nanopore direct RNA sequencing
nspies/genomeview
An extensible python-based genomics visualization engine
widdowquinn/Teaching-Stan-Hierarchical-Modelling
Jupyter notebooks for teaching hierarchical Bayesian modelling with Stan
mjsull/Easyfig
Development version of Easyfig
ryanlayer/samplot
Plot structural variant signals from many BAMs and CRAMs
coadunate/nanoView
Visualization tool for nanopore data
thomasp85/patchwork
The Composer of ggplots
btel/svg_utils
Python tools to create and manipulate SVG files
snap-stanford/graphwave
deeptools/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks