schroeme

4th year PhD Candidate in MIT Brain and Cognitive Sciences, in Feng & Boyden Labs.

Pinned Repositories

CellProfiler
An open-source application for biological image analysis
Language:Python925 45 3.3k378
Palantir
Single cell trajectory detection
Language:Jupyter Notebook226 11 12452
liana
LIANA: a LIgand-receptor ANalysis frAmework
Language:R183 9 16231
AstrocyteCaAnalysis
Custom MATLAB scripts for analyzing Calcium activity in mixed neuron-astrocyte cultures
Language:MATLAB0 1 00
CO2EmissionPracticeDemo
Language:Jupyter Notebook0 0 00
ExR
Expansion Revealing
Language:MATLAB1 1 00
ExR-tools
New repo for streamlined end-to-end ExR/multiExR/ExRPath analysis pipelines
Language:Python0 2 00
multi-ExR
Language:Jupyter Notebook0 1 00
pertpy
Perturbation Analysis in the scverse ecosystem.
Language:Python142 4 24821
scCODA
A Bayesian model for compositional single-cell data analysis
Language:Jupyter Notebook152 9 9124

schroeme's Repositories

schroeme/ExR
Expansion Revealing
Language:MATLAB1 1 00
schroeme/AstrocyteCaAnalysis
Custom MATLAB scripts for analyzing Calcium activity in mixed neuron-astrocyte cultures
Language:MATLAB0 1 00
schroeme/CO2EmissionPracticeDemo
Language:Jupyter Notebook0 0 00
schroeme/ExR-tools
New repo for streamlined end-to-end ExR/multiExR/ExRPath analysis pipelines
Language:Python0 2 00
schroeme/multi-ExR
Language:Jupyter Notebook0 1 00