Steric clash in docking result file

[Le-Phung-Hien]

Hi Xujun,

I run karmadock with this receptor
receptor.pdb.txt, ligand ligand.smi.txt, and crystal ligand Crystal_lig.mol2.txt. Many output structure have steric clash with the receptor file, e.g. CP1_pred_align_corrected.sdf.txt or CP6_pred_align_corrected.sdf.txt.

I have use the yaml file in test.zip to build environment.

Where do you thing is the issue?

Thanks!

Hien