scikit-tda/ripser.py

`ValueError: numpy.ndarray size changed`

galenseilis opened this issue · 7 comments

galenseilis commented

On Ubuntu (current LTS) the command pip install scikit-tda appeared to work without error. However running the import for ripser gives a value error.

>>> import ripser
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/galen/.local/lib/python3.8/site-packages/ripser/__init__.py", line 1, in <module>
    from .ripser import *
  File "/home/galen/.local/lib/python3.8/site-packages/ripser/ripser.py", line 34, in <module>
    from pyRipser import doRipsFiltrationDM as DRFDM
  File "ripser/pyRipser.pyx", line 1, in init pyRipser
ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
ZWAdams commented

I got the same error. Any updates on this?

  • 👍1
ctralie commented
ZWAdams commented

Thanks for responding! I tried that, still not working. I'm running on an M1 chip, could that be part of the issue?

  • 👍1
ctralie commented

What I'd do is create an entirely new environment in conda and make ripser.py the first thing you install there

https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html

ctralie commented