Bugs in Distance metrics tutorial
Closed this issue · 1 comments
Lilly-May commented
In it's current version, the Distance metrics tutorial throws several errors. Most of them can be easily fixed by implementing the following things:
- Remove
verbose
as a parameter frompairwise
method whenever it's used in the tutorial - Specify that 'X_pca' is the
obsm_key
parameter when initializing a Distance object (obsm_key='X_pca'
) - Use correct distance name: There is one section titled PseudobulkDistance and a Distance object is initialized with the distance 'pseudobulk'. This distance, however, doesn't exist, hence an error is thrown. Is it possible that
pseudobulk
was renamed and is now calledeuclidean
?
All those things are easily fixed, I just need conformation on the distance that is supposed to be used in the Pseudobulk section.
Zethson commented
@Lilly-May yes, it was indeed renamed to what you said