scverse/scvi-tools

Issues

• Error saving MrVI model

  #2813 opened 6 months ago
  2

• bug for custom classifier in adversarial training plan

  #2810 opened 5 months ago
  2

• cannot import name 'MRVI' from 'scvi.external'

  #2806 opened 5 months ago
  2

• different hidden unit in each layer

  #2804 opened 6 months ago
  1

• Support the latest version of torchmetrics

  #2803 opened 6 months ago
  0

• Issues installing recommended packages

  #2800 opened 5 months ago
  4

• The scrna_raw_counts_properties method has an error in the calculation method of the raw_normalized_mean2 field, causing the raw_normalized_mean2 indicator to be invalid.

  #2792 opened 6 months ago
  4

• poor integration effect cross species

  #2788 opened 7 months ago
  2

• Support for weighted loss either per-batch or per-cell?

  #2785 opened 4 months ago
  2

• AttributeError: module 'scvi' has no attribute 'autotune'

  #2784 opened 4 months ago
  4

• flax: Trying to access a property that is accessing a non-existent attribute. - JaxBaseModuleClass

  #2782 opened 6 months ago
  2

• Scvi in R doesn't update to scvi-tools even after uninstalling and reinstalling (I think :)

  #2781 opened 7 months ago
  3

• Jax version of VAEMixin

  #2779 opened 7 months ago
  0

• Consider non-jitting MRVI tests/long tests pytest flag

  #2774 opened 7 months ago
  0

• Can we have a scVI with reconstruction distirbution as normal distribution?

  #2755 opened 6 months ago
  4

• Assistance Required with scvi-tools GPU Setup on Ubuntu

  #2754 opened 7 months ago
  7

• 'SCVI' object has no attribute 'eval'

  #2740 opened 7 months ago
  2

• Training models with torch.Tensor input

  #2736 opened 7 months ago
  4

• SemiSupervisedDataSplitter not properly separating unlabelled cells into train/val/test

  #2729 opened 6 months ago
  1

• scvi tools train with multi gpus

  #2726 opened 4 months ago
  3

• benign typo in kwarg

  #2720 opened 7 months ago
  1

• Update CI description in maintenance guide

  #2716 opened 5 months ago
  1

• Fail to accerlerate scvi analysis using gpu on mac M1

  #2709 opened 8 months ago
  7

• SCVI can no longer be imported in R studio via reticulate

  #2694 opened 8 months ago
  2

• Jax dependency error, solution other than downgrade?

  #2693 opened 8 months ago
  6

• Document `SOLO.predict()` return values better.

  #2688 opened 8 months ago
  9

• VeloVI uses np.argsort, does not work with sparse spliced/unspliced layers

  #2687 opened 4 months ago
  5

• Use TensorBoard as default logger

  #2645 opened 8 months ago
  0

• Mixed usage of `n_samples_overall` in `get_normalized_expression`

  #2641 opened 8 months ago
  2

• conda issue- import scvi

  #2639 opened 8 months ago
  5

• torch.distributed.DistBackendError when training on multiple GPUs

  #2635 opened 8 months ago
  5

• No library_size argument in get_normalized_expression for MultiVI

  #2634 opened 8 months ago
  1

• Support `RNASeqMixin` methods in `CondSCVI`

  #2631 opened 4 months ago
  0

• `CondSCVI.posterior_predictive_sample` fails with `KeyError`

  #2628 opened 4 months ago
  0

• TotalVI unexpected behaviour in differential expression function

  #2627 opened 5 months ago
  0

• Allow `DestVI.from_rna_model` to transfer and extend single-cell batch key

  #2625 opened 4 months ago
  0

• Add support for batch embedding representations in `CondSCVI`

  #2624 opened 4 months ago
  0

• Add support for `batch_key` in `CondSCVI`

  #2623 opened 8 months ago
  0

• Allow extending batch key from `CondSCVI` to `DestVI`

  #2622 opened 4 months ago
  0

• Add torch neuron support for scvi tools

  #2619 opened 5 months ago
  3

• PyroModelGuideWarmup fails on GPU - probably need to be manually run before `trainer.fit()`

  #2616 opened 8 months ago
  4

• No search space autotune error

  #2614 opened 8 months ago
  8

• reference mapping using the original umap

  #2613 opened 8 months ago
  1

• Transfer veloVI to external

  #2610 opened 8 months ago
  0

• AttributeError: module 'numpy' has no attribute 'str

  #2609 opened 6 months ago
  2

• TypeError with model.train() using R reticulate

  #2607 opened 3 months ago
  2

• Failing to train on multiple GPUs in jupyter notebook

  #2602 opened 9 months ago
  4

• Add feature to generate coordinates for `synthetic_iid`

  #2601 opened 9 months ago
  1

• ParserError: Error tokenizing data. C error: Expected 1 fields in line 52, saw 3

  #2597 opened 9 months ago
  1

• Allow scArches to extend categorical covariates

  #2583 opened 3 months ago
  1