selfteaching/How-To-Ask-Questions-The-Smart-Way

How to visualise gene expression matrix of only 2 genes

NaomiCroft opened this issue · 1 comments

I have been working with single cell sequencing data on R, where the data pbject is a seurat object, containing genes and cells in an expression matrix. I want to visualize expression of 2 genes in 13,000 cells a similar manner to that of classical flow cytometry plots, where each dot is a cell:
i.e. as below
image

Is this possible? Suggestions welcome,
Thanks!
Naomi

I see now I can use feature scatter plots