seqan/seqan3

Issues

• [CRON] API-Stability

  #3280 opened 3 months ago by eseiler
  4

• Problem with installation on mac os x

  #3286 opened 3 months ago by mkazanov
  5

• Unsupported sam headers get silently stripped

  #3251 opened 3 months ago by notestaff
  2

• Improve SAM tag handling

  #3283 opened 3 months ago by eseiler
  0

• Score prealigned sequences

  #3282 opened 3 months ago by tkramer-motion
  0

• Alignment of sequences consisting of arbitrary 64 bit integers

  #3271 opened 4 months ago by paoloshasta
  14

• Question regarding the usage of `seqan3::fm_index_cursor` using `seqan3::bitpacked_sequence`.

  #3264 opened 4 months ago by Dhruv-mak
  4

• Alphabet conversion is not properly constrained

  #3267 opened 4 months ago by rrahn
  5

• Incorrect begin/end of alignment for banded alignment

  #3266 opened 4 months ago by paoloshasta
  3

• Sporadic failures in FM-index creation in a multi-threading context

  #3258 opened 5 months ago by behrj
  10

• several same-score pairwise alignments

  #3198 opened a year ago by notestaff
  6

• Allow min_score alignment config for arbitrary (user defined) edit distance schemes

  #3253 opened 6 months ago by feldroop
  4

• Multi-threading, banding, other speed-ups

  #3255 opened 6 months ago by jaysunl
  3

• single-thread mode

  #3239 opened 9 months ago by notestaff
  4

• sam tags functions

  #3236 opened 6 months ago by notestaff
  4

• appending records to a .bam

  #3250 opened 9 months ago by notestaff
  1

• Unsupported SAM header tag in @HD: pb

  #3215 opened 9 months ago by notestaff
  6

• The shape size for the kmer_hash.

  #3242 opened 9 months ago by JappyPing
  3

• small documentation error

  #3237 opened 9 months ago by notestaff
  2

• creating SAM file headers

  #3235 opened 9 months ago by notestaff
  1

• 3.3.0 Release

  #3166 opened 10 months ago by eseiler
  3

• compiling with _GLIBCXX_DEBUG gives errors

  #3221 opened 10 months ago by notestaff
  4

• Question about large alphabet set

  #3220 opened 10 months ago by abde-ali-kagalwalla
  3

• Convert vertor<dna5> to std:string

  #3218 opened a year ago by nhhaidee
  1

• [libc++] std::result_of_t was removed in C++20

  #3207 opened a year ago by yurivict
  3

• configure fails to find SDSL despite sdsl-lite.pc being present

  #3206 opened a year ago by yurivict
  1

• output_sequence1_id and output_sequence2_id are same

  #3205 opened a year ago by JappyPing
  4

• incorrect documentation of alignment result?

  #3202 opened a year ago by notestaff
  1

• alignment slice positions

  #3203 opened a year ago by notestaff
  1

• Tests fail to compile

  #3191 opened a year ago by yurivict
  2

• 3.2.0 Release

  #3010 opened a year ago by eseiler
  9

• Use OS/system packaged sdsl library

  #3162 opened a year ago by kbipinkumar
  10

• GCC 13 errors

  #3138 opened 2 years ago by sagitter
  7

• [IO] Make `seqan3::sam_file_header::program_info_t` easier to copy

  #3137 opened 2 years ago by tsnorri
  6

• Running Align Pairwise with linear gap Penalty and faster runtime than for affine gap penalty

  #3136 opened 2 years ago by lantoine16
  3

• FASTA IO parses newlines into sequence when alphabet is char

  #3126 opened 2 years ago by smehringer
  0

• [IO] constructors in sam_file_output handle do not forward rvalue references to initialise_header_information()

  #3124 opened 2 years ago by tsnorri
  1

• How to update an already built FM-Index

  #3114 opened 2 years ago by Wang-kaifei
  2

• [IO] BAM index support

  #2985 opened 3 years ago by jay-tux
  6

• [Alignment] Is there a way to run align_pairwise without traceback?

  #3045 opened 2 years ago by leannmlindsey
  3

• [Alignment] Wrong alignment score

  #3043 opened 2 years ago by yceh
  8

• Invalid SSL certificate on docs.seqan.de

  #3093 opened 2 years ago by eseiler
  0

• [IO] Typedef for numeric reference ID type, constant for invalid reference ID in SAM/BAM input

  #3084 opened 2 years ago by tsnorri
  2

• push_back for aa27

  #3018 opened 2 years ago by leannmlindsey
  5

• char_traits.h:431:56: error: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’

  #3054 opened 2 years ago by tillea
  2

• Compilation issue in iterator_traits.hpp

  #3001 opened 2 years ago by jay-tux
  2

• Bug: bgzf_thread_count not available if zlib not installed

  #3041 opened 2 years ago by SGSSGene
  0

• MacOS - difficulty configuring cmake

  #3046 opened 2 years ago by SGSSGene
  3

• Pipe notation does not compile with ranges::to

  #3044 opened 2 years ago by joergi-w
  2

• gcc13: specialization after instantiation

  #3015 opened 2 years ago by eseiler
  0