Illegal division by zero

[juancresc]

I'm running tephra using potato genome

nohup tephra all -c tephra_config.yml &

This is the config file, the rest is as default

~/tephra/tephra-0.12.2/config$ cat tephra_config.yml
## For more information about this file, see: 
## https://github.com/sestaton/tephra/wiki/Specifications-and-example-usage.
all:
  - logfile:          tephra_potato_genome.log
  - genome:           potato_dm_v404_all_pm_un.fasta
  - outfile:          potato_genome_transposons.gff3
  - repeatdb:         TEs_all_Repbase_St.fasta 
  - trnadb:           TephraDB
  - hmmdb:            TephraDB
  - threads:          14
  - clean:            YES
  - debug:            NO
  - subs_rate:        1e-8

And this is the output with the error

tail -f nohup.out 

INFO - Output files - /home/dzavallo/tephra/tephra-0.12.2/config/potato_dm_v404_all_pm_un_tephra_transposon_fragments.fasta
INFO - Command - Generating combined FASTA file of fragments and complete elements at: 06-11-2018 03:10:43.
INFO - Results - Finished generating combined FASTA file of fragments and complete elements at: 06-11-2018 03:10:49. Final output files:
INFO - Output files - potato_genome_transposons.fasta
INFO - Command - Generating combined GFF3 file at: 06-11-2018 03:10:49.
INFO - Results - Finished generating combined GFF3 file at: 06-11-2018 03:11:14. Final output files:
INFO - Output files - potato_genome_transposons.gff3
INFO - Command - Calculating global transposon family similarity at: 06-11-2018 03:11:14.
Use of uninitialized value $pid_sum in division (/) at /usr/local/share/perl/5.22.1/Tephra/Annotation/Util.pm line 378.
Illegal division by zero at /usr/local/share/perl/5.22.1/Tephra/Annotation/Util.pm line 378.

[sestaton]

This is just a warning that can be ignored for now, but I will fix the issue in the next release (today, probably).

It looks like the command completed fine otherwise. Do you see the output files according to the logs?

[juancresc]

I'll check the outputs but looks good till now. Thanks