simexin

simexin's Stars

• OpenGene/ctdna-pipeline

  A simplified pipeline for ctDNA sequencing data analysis

  Language:Shell3616

• coursera-dl/coursera-dl

  Script for downloading Coursera.org videos and naming them.

  Language:Python9.4k2.2k

• ept/ddia-references

  Literature references for “Designing Data-Intensive Applications”

  6k791

• ageron/handson-ml

  ⛔️ DEPRECATED – See https://github.com/ageron/handson-ml3 instead.

  Language:Jupyter Notebook25.2k12.9k

• chiphuyen/stanford-tensorflow-tutorials

  This repository contains code examples for the Stanford's course: TensorFlow for Deep Learning Research.

  Language:Python10.3k4.3k

• ShahariarRabby/deeplearning.ai

  deeplearning.ai , By Andrew Ng, All video link

  647378

• common-workflow-language/common-workflow-language

  Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

  Language:Common Workflow Language1.5k196

• Illumina/canvas

  Canvas - Copy number variant (CNV) calling from DNA sequencing data

  Language:C#12220

• cbrownley/foundations-for-analytics-with-python

  Language:Python461681

• ujjwalkarn/DataSciencePython

  common data analysis and machine learning tasks using python

  Language:Python5.3k1.5k

• jakevdp/PythonDataScienceHandbook

  Python Data Science Handbook: full text in Jupyter Notebooks

  Language:Jupyter Notebook43.5k18k

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k621

• ossu/bioinformatics

  :microscope: Path to a free self-taught education in Bioinformatics!

  5.6k938

• innovation-cat/DeepLearningBook

  This repository is used to publish source code of my deep learning book

  Language:Python12898

• Bioconductor/copy-number-analysis

  Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis

  Language:R2112

• biostuff/CNVPanelizer

  Reliable CNV detection in targeted sequencing applications

  Language:R92

• hail-is/hail

  Cloud-native genomic dataframes and batch computing

  Language:Python985247

• mskcc/mutation-signatures

  Create mutation signatures from MAF's, and decompose them into Stratton signatures

  Language:R6030

• soccin/BIC-variants_pipeline

  BIC@MSKCC Variants Pipeline

  Language:C++2318

• rhshah/IMPACT-SV

  Detection of Structural Variants Using Delly and Annotation using dRanger

  Language:Perl72

• rhshah/IMPACT-Pipeline

  Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

  Language:Perl559

• jzook/genome-data-integration

  Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls

  Language:Shell4311

• ga4gh/benchmarking-tools

  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

  Language:HTML19347

• cooplab/popgen-notes

  Population genetics notes

  Language:PostScript656129

• crazyhottommy/getting-started-with-genomics-tools-and-resources

  Unix, R and python tools for genomics and data science

  Language:Shell1.2k351

• quinlan-lab/applied-computational-genomics

  Applied Computational Genomics Course at UU: Spring 2020

  Language:HTML951211

• genome-in-a-bottle/giab_data_indexes

  This repository contains data indexes from NIST's Genome in a Bottle project.

  Language:Roff23871

• ty4z2008/Qix

  Machine Learning、Deep Learning、PostgreSQL、Distributed System、Node.Js、Golang

  14.8k4.7k

• rnons/ted2srt

  Download bilingual subtitles of TED talks. https://ted2sub.org now.

  Language:Haskell14321

• phenotips/phenotips

  The open-source version of PhenoTips is no longer maintained. PhenoTips makes it simple to record clinical findings observed in patients with possible genetic disorders through an easy-to-use Web interface

  Language:Java10163