slavailn's Repositories
slavailn/ATAC_seq_workflow_2020
A workflow template for ATAC-seq
slavailn/AWS_tutorial
slavailn/helper_scripts
slavailn/Hemp_RNAseq_workflow
slavailn/HISAT2_featureCounts_mRNA_seq
Make based mRNA-seq pipeline (QC, HISAT2, featureCounts). This is a gene level workflow for Single-End Illumina reads.
slavailn/Isoform_Switch_Analysis
slavailn/mapping_with_STAR
Read mapping with STAR (primer)
slavailn/Metagenomics
Metagenomics related notes and code snippets
slavailn/PE_RNAseq_pipeline
RNA-seq pipeline for paired-end reads. Implemented in bpipe
slavailn/python_model
slavailn/python_training
Working through python course, also notes for future reference
slavailn/R_tutorials
slavailn/RNASEQ_SNV_CALLING
A workflow to call SNVs using RNA sequencing reads
slavailn/STAR_featureCounts_PE_mRNAseq
A simple bpipe pipeline that maps paired-end reads downloaded from SRA archive to the reference genome
slavailn/TB_Antibio_workflow
Variant calling for M. tuberculosis followed by the detection of antibiotic resistance variants inspired by Phyresse
slavailn/term_enrichment_scripts
This repository contains R workflows designed to calculate and visualize term enrichment for lists of genes
slavailn/terpene_synthase_project
Detection of terpene synthase genes across Cannabis cultivars
slavailn/trinnotate_workflow_example
An example of Trinnotate workflow based on Cannabis CS10 genome assembly to serve as a reference for future use
slavailn/useful_one_liners