slimsuite
Bioinformatics, genomics and molecular evolution lab of Dr Richard Edwards, University of Western Australia.
UWAPerth, Australia
Pinned Repositories
buscomp
BUSCOMP: BUSCO Compiler and Comparison tool
chromsyn
Chromosome-level synteny plotting using orthologous regions
depthsizer
Read-depth based genome size prediction
diploidocus
Diploid genome assembly analysis tools
gapspanner
Genome assembly gap long read support and reassembly tool
numtfinder
NUMTFinder: Nuclear mitochondrial fragment (NUMT) search tool
pafscaff
PAFScaff: Pairwise mApping Format reference-based scaffold anchoring and super-scaffolding.
saaga
SAAGA: Summarise, Annotate & Assess Genome Annotations
SLiMEnrich
SLiMEnrich Shiny App for prediction of domain-motif interactions
SLiMSuite
Open source short linear motif discovery and sequence analysis
slimsuite's Repositories
slimsuite/chromsyn
Chromosome-level synteny plotting using orthologous regions
slimsuite/SLiMSuite
Open source short linear motif discovery and sequence analysis
slimsuite/buscomp
BUSCOMP: BUSCO Compiler and Comparison tool
slimsuite/diploidocus
Diploid genome assembly analysis tools
slimsuite/pafscaff
PAFScaff: Pairwise mApping Format reference-based scaffold anchoring and super-scaffolding.
slimsuite/depthsizer
Read-depth based genome size prediction
slimsuite/gapspanner
Genome assembly gap long read support and reassembly tool
slimsuite/numtfinder
NUMTFinder: Nuclear mitochondrial fragment (NUMT) search tool
slimsuite/saaga
SAAGA: Summarise, Annotate & Assess Genome Annotations
slimsuite/SLiMEnrich
SLiMEnrich Shiny App for prediction of domain-motif interactions
slimsuite/snapper
Genome-wide SNP Mapper and Genome Comparison Tool
slimsuite/synbad
Synteny-based scaffolding adjustment
slimsuite/taxolotl
Genome assembly taxonomy summary and assessment tool.
slimsuite/depthcharge
Genome assembly quality control and misassembly repair
slimsuite/depthkopy
Read-depth based copy number estimation
slimsuite/MerquryRising
Merqury parsing and comparison for genome assembly purging QC
slimsuite/quenda
Quenda: Quality Estimation N Depth Analysis
slimsuite/SLiMScape
Cytoscape plugin for discovery and analysis of Short Linear Motifs
slimsuite/telociraptor
Telomere Prediction and Genome Assembly Editing Tool
slimsuite/wgs2tree
A snakemake workflow for generating consensus phylogenomic trees from whole genome sequencing data
slimsuite/deduce
slimsuite/EdwardsLabWiki
Edwards Lab Wiki for miscellaneous documentation development
slimsuite/gapmap
Assembly gap mapping tool
slimsuite/GenomeR
An R Shiny app for kmer-based genome size prediction
slimsuite/SAMPhaser
Diploid chromosome phasing from SAMTools Pileup format
slimsuite/SLiMSuiteShiny
Shiny implementation of SLiMSuite REST parser