Pinned Repositories
containers
Bioinformatics containers
deenurp
16S rRNA gene sequence curation and phylogenetic reference set creation
sminot's Repositories
sminot/containers
Bioinformatics containers
sminot/deenurp
16S rRNA gene sequence curation and phylogenetic reference set creation
sminot/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
sminot/asmngs18
ASMNGS18 - 2018 Conference Details
sminot/btc-sc-modules
sminot/btc-scrna-pipeline
A Nextflow pipeline for single-cell RNA-Seq dataset
sminot/compose-spec
The Compose specification
sminot/docker
Dockerfiles
sminot/easybuild-life-sciences
Howto and implementation documentation
sminot/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
sminot/hugo-theme-stack-starter
A quickstart template to create a Hugo blog using hugo-theme-stack
sminot/maliampi
Maximum Likelihood Amplicon Pipeline
sminot/midas_nextflow
Running Midas using nextflow
sminot/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
sminot/parsnp
sminot/phip-flow
A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
sminot/picard_demux_snakemake
A quick Snakemake pipeline for converting BCL files to fastq and unaligned bam files.
sminot/pyodide
Pyodide is a Python distribution for the browser and Node.js based on WebAssembly
sminot/quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
sminot/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
sminot/WiPhy_HIV
sminot/x-gene-expression
Reproducing "Sex-Biased Gene Expression and Evolution of the X Chromosome in Nematodes"