smithlabcode/smurfseq_scripts

Issues

• Why use bwa mem to align the sequence？

  #6 opened 4 years ago by WellJoea
  1

• getFragsFromLongReads.py: Reference start offset when fragment start offset is greater than 0

  #5 opened 5 years ago by rishvanth-kp
  1

• getFragsFromLongReads.py: Cigar index mismatch when bases are clipped

  #4 opened 5 years ago by rishvanth-kp
  1

• Specific comments lacking for parameters hard-coded within cnvAnalysis.R

  #2 opened 6 years ago by andrewdavidsmith
  1

• CNV plots: bin counts and segmented values are plotted at incorrect x-coordinates

  #3 opened 6 years ago by rishvanth-kp
  1

• Fix output file names

  #1 opened 6 years ago by andrewdavidsmith
  1