Why use bwa mem to align the sequence？
WellJoea opened this issue · 1 comments
WellJoea commented
Why donot use the long-reads alignment software, such as minimap2, graphmap and ngmlr?
What is the advantage of bwa mem? In other words, can I use the monimap2 to get the sam/bam file for smurfseq
andrewdavidsmith commented
I don’t see a bug or a feature request here, or anything about the software as written (or even anything specific at all). The published paper on SMURF-seq has contact information for such questions.