Pinned Repositories
ALMRun
绿色实用,功能强大的快速启动软件,Merry和ALTRun的结合体
bac-genomics-scripts
Collection of scripts for bacterial genomics
be-a-professional-programmer
成为专业程序员路上用到的各种优秀资料、神器及框架
Beginning-Perl-for-Bioinformatics
Beginning Perl for Bioinformatics · 生物信息学 Perl 语言入门（中文版）
biocode
Bioinformatics code libraries and scripts
biocode-1
biocode
Bioinformatics-skills
生物信息学技能提升，专注于工具使用与编程
CopyTranslator
Foreign language reading and translation assistant based on copy and translate.
Genome_Assembly_lecture
A lecture for basic genome assembly
linux-command
Linux命令大全搜索工具，内容包含Linux命令手册、详解、学习、搜集。https://git.io/linux
smyang2018's Repositories
smyang2018/goatools
Python scripts to find enrichment of GO terms
smyang2018/RNAplonc
A tool for identification of plant long non-coding RNAs.
smyang2018/diamond
Accelerated BLAST compatible local sequence aligner.
smyang2018/interproscan
smyang2018/TransDecoder
TransDecoder source
smyang2018/gffcompare
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
smyang2018/biocode
Bioinformatics code libraries and scripts
smyang2018/genometools
GenomeTools genome analysis system.
smyang2018/Wox
Launcher for Windows, an alternative to Alfred and Launchy.
smyang2018/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
smyang2018/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
smyang2018/ggplot2
An implementation of the Grammar of Graphics in R
smyang2018/circtools
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in single command line driven software.
smyang2018/DCC
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
smyang2018/DESeq2
RNA-seq;stringtie;hista2
smyang2018/linux-command
Linux命令大全搜索工具，内容包含Linux命令手册、详解、学习、搜集。https://git.io/linux
smyang2018/STAR
RNA-seq aligner
smyang2018/stringtie
Transcript assembly and quantification for RNA-Seq
smyang2018/NGS-pipe
NGS-pipe: next-generation sequencing pipelines for precision oncology
smyang2018/canu
A single molecule sequence assembler for genomes large and small.
smyang2018/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
smyang2018/circlize
Circular visualization in R
smyang2018/Notebook
smyang2018/handbook
放置我的笔记、搜集、摘录、实践，保持好奇心。看文需谨慎，后果很严重。
smyang2018/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
smyang2018/ngs-test-data
A workflow for creating small NGS test data sets, useful for continuous integration.
smyang2018/mysql-tutorial
MySQL入门教程（MySQL tutorial book）
smyang2018/ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
smyang2018/RNA-seq-analysis
RNAseq analysis notes from Tommy Tang
smyang2018/DNA-seq-analysis
my notes on whole exome and whole genome sequencing analysis