The Snakemake-profiles project is an effort to create configuration profiles for executing Snakemake in various computing environments (cluster systems like Slurm, SGE, Grid middleware, cloud computing). Snakemake-profiles has just started, and we need your help to support more computing environments.
In the following, you find a list of available profiles.
| Profile | Authors |
|---|---|
| surfsara-grid | @johanneskoester |
| pbs-torque | @neilav |
| slurm | @percyfal |
| lsf | @mbhall88 |
| generic | @SilasK |
| htcondor | @jheuel |
| sge | @drjbarker |
Contributing is easy:
- Create a new repository for your profile with your github account.
- Ensure that your profile follows our guidelines.
- Request a inclusion of your profile by creating a new issue. After successful review, we will fork your repository into this organization. This makes it easily discoverable by others, while you can still modify it via pull requests.
- A profile repository shall consist of one Snakemake profile.
- The structure of the profile should follow the surfsara-grid profile.
- The profile has to be installabile via cookiecutter.
- The readme of the profile has to provide installation instructions.