snayfach

Pinned Repositories

AssemblyEvaluator
A simple tool for evaluating a metagenomic assembly
Language:Python5 2 04
IGGdb
Database of genomes integrated from the gut microbiome and other environments
44 3 89
IGGsearch
Metagenomic species profiling with enhanced coverage of the human gut microbiome
Language:Python24 4 318
MAGpurify
Improvement of metagenome-assembled genomes
Language:Python49 2 2312
MGV
Supporting code for uncultivated gut virus manuscript
Language:Python66 2 2918
MicrobeCensus
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
Language:Python43 7 3116
MIDAS
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
Language:Python124 12 9452
UHGV
Unified Human Gut Virome Catalog
Language:Python27 3 721

snayfach's Repositories

snayfach/MIDAS
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
Language:Python124 12 9452
snayfach/MGV
Supporting code for uncultivated gut virus manuscript
Language:Python66 2 2918
snayfach/MAGpurify
Improvement of metagenome-assembled genomes
Language:Python49 2 2312
snayfach/IGGdb
Database of genomes integrated from the gut microbiome and other environments
44 3 89
snayfach/MicrobeCensus
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
Language:Python43 7 3116
snayfach/UHGV
Unified Human Gut Virome Catalog
Language:Python27 3 721
snayfach/IGGsearch
Metagenomic species profiling with enhanced coverage of the human gut microbiome
Language:Python24 4 318
snayfach/AssemblyEvaluator
A simple tool for evaluating a metagenomic assembly
Language:Python5 2 04
snayfach/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
Language:JavaScript0 0 01
snayfach/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0
snayfach/ClustCompare
Pipeline to compare secondary metabolite biosynthetic gene clusters (BGCs)
Language:Perl0 01
snayfach/Dropbox-Uploader
Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.
Language:Shell1 01
snayfach/genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
Language:Shell0 0
snayfach/metatrans
Translate shotgun sequences
Language:C1 0
snayfach/MIDAS-strains
Estimate strains from reads mapped to pan-genomes from the MIDAS database
Language:Python2 1