soedinglab/plass

Issues

• Feature requests: (Un)trusted contigs and mixed read types support

  #49 opened 3 months ago by ohickl
  0

• Data Access

  #48 opened 3 months ago by shengxiaobufu
  1

• Penguin: no assembled contigs

  #47 opened 3 months ago by cv-1993
  0

• Insights needed for comparison with other assemblers

  #46 opened 7 months ago by GeoMicroSoares
  1

• High level of duplicated protein sequences

  #41 opened 7 months ago by hegardon
  1

• Quality trimming reads?

  #44 opened 9 months ago by timghaly
  2

• Alternative codon table

  #45 opened 8 months ago by aabaricalla
  2

• Incorrect headers for Nuc -> Protein

  #11 opened 6 years ago
  7

• general question to gauge dev opinion/advice on selecting proteins for gene phylogenies

  #43 opened 2 years ago by clb21565
  2

• mmseqs extractorfs can tranlate orfs but CLI does not allow to specify tranlation table

  #42 opened 2 years ago by SilasK
  2

• Quantification

  #40 opened 2 years ago by stheil15
  0

• Paired read prediction - mergereads failed

  #38 opened 3 years ago by dnolin13
  3

• Install issues

  #37 opened 3 years ago by slschnorr
  6

• Update MMseqs2 submodule

  #36 opened 3 years ago by genomewalker
  0

• Use PLASS in metatranscriptomic data

  #35 opened 4 years ago by jjsanchezgil
  5

• Issue with Docker image soedinglab/plass:latest

  #34 opened 4 years ago by winkel111
  2

• Empty (len:0) sequences in plass output

  #33 opened 4 years ago by aleixop
  4

• Using more stringent parameters to avoid spurious sequences

  #17 opened 5 years ago by apcamargo
  9

• Some Issues about the length of protein sequences

  #31 opened 4 years ago by susutBu
  2

• MPI local-tmp

  #23 opened 5 years ago by genomewalker
  1

• Segmentation fault translatenucs

  #30 opened 4 years ago by sarah872
  2

• The output file is empty

  #29 opened 4 years ago by Sami-Altayyar
  1

• Use Plass for euk metagenomics data

  #28 opened 4 years ago by liuxianghui
  2

• Error running mpi job with class

  #27 opened 4 years ago by liuxianghui
  1

• missing handling of small number of input reads

  #26 opened 5 years ago by mr-eyes
  7

• map of input sequences to assembled sequence

  #25 opened 5 years ago by galicae
  0

• Using already predicted ORFs from reads

  #24 opened 5 years ago by genomewalker
  4

• Final output file size 0

  #22 opened 5 years ago by taylorreiter
  2

• Is it possible to read sequences from stdin or to provide multiple unpaired files at once?

  #21 opened 5 years ago by mooreryan
  1

• Defining minimum ORF length doesn't work

  #10 opened 5 years ago by genomewalker
  1

• Protein sequence abundance

  #13 opened 5 years ago by cmorganl
  5

• Recurrently getting "Kmer matching step died"

  #19 opened 5 years ago by apcamargo
  7

• Core dump during assembly

  #18 opened 5 years ago by apcamargo
  2

• Can not allocate index memory in DBReader

  #16 opened 5 years ago by kihyunee
  6

• Compilation error: zlib found but not working

  #15 opened 5 years ago by FranckLejzerowicz
  4

• Assembling big data

  #14 opened 5 years ago by lzaramela
  5

• Intuitions regarding possible output and previous steps

  #12 opened 5 years ago by adriaaula
  1

• Reduce TMP disk usage

  #5 opened 6 years ago by genomewalker
  5

• Automated Docker images with sha256 tags

  #7 opened 6 years ago by sminot
  4

• ID collisions in FASTA output

  #1 opened 6 years ago by maitai
  6

• Combining single and paired reads

  #8 opened 6 years ago by mooreryan
  2

• Running plass in parallel on same 'tmp' folder

  #9 opened 6 years ago by mhibberd
  2

• Output FASTA header format?

  #6 opened 6 years ago by sjaenick
  2

• mem or disk issue?

  #4 opened 6 years ago by colindaven
  4

• Compilation error - cannot find AminoAcidLookupTables.h

  #3 opened 6 years ago by ctb
  2

• Option to change genetic code (translation table)?

  #2 opened 6 years ago by sminot
  8