soedinglab/plass

Alternative codon table

aabaricalla opened this issue · 2 comments

aabaricalla commented

I recently found this tool and I'll try as soon as possible.
I'm trying to reconstruct a mitochondrial genome without closely related specie, so I think this approach could be a better way to do it, but I'm concern about the codon table.
There is any chance to use the codon 5 table (invertebrate)?

milot-mirdita commented

You should be able to use --use-all-table-starts 1 --translation-table 5 , however, we have not extensively tested alternative codon tables.

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aabaricalla commented

Thanks a lot!! I'll be sending you my test results ASAP.