sohnjangil's Stars
maragkakislab/samql
SQL-like query language for the SAM/BAM file format
baoe/AlignGraph
Algorithm for secondary de novo genome assembly guided by closely related references
lh3/minigraph
Sequence-to-graph mapper and graph generator
attractivechaos/klib
A standalone and lightweight C library
cartoonist/kseqpp
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
GFA-spec/GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
edawson/gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
pgzip/pgzip
A multi-threading implement of Python gzip module
vinlyx/mgzip
A multi-threading implement of Python gzip module
ETCHING-team/ETCHING
Ultra-fast, high-performing structural variation (SV) detector
Cyan4973/xxHash
Extremely fast non-cryptographic hash algorithm
cancerit/BRASS
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
shaldokin/picual
A fast, c-based pickling library with some helpful features for pickling and multiprocessing
P-p-H-d/mlib
Library of generic and type safe containers in pure C language (C99 or C11) for a wide collection of container (comparable to the C++ STL).
alecjacobson/puppet
Corresponding code for the SIGGRAPH 2014 paper "Tangible and Modular Input Device for Character Articulation"
chusAB/bvSFMindex
bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.
DixianZhu/deBWT
A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.
hewillk/fm_index
Highly optimized FM-Index for genome sequence.
walaj/SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
bcgsc/ntCard
Estimating k-mer coverage histogram of genomics data
gatoravi/bam-parser-tutorial
A simple example of parsing BAM files using htslib
malonge/RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
dmlc/treelite
Universal model exchange and serialization format for decision tree forests
SelimaC/large-scale-sparse-neural-networks
thegenemyers/FASTK
A fast K-mer counter for high-fidelity shotgun datasets
biodata-fun/htslib_howto
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
ACEnglish/truvari
Structural variant toolkit for VCFs