Pinned Repositories
alphafold
Open source code for AlphaFold.
AnchorWave
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
Asgard
scRNA-drug-main
awesome-public-datasets
A topic-centric list of HQ open datasets.
B10KGenome_annotation
Scripts used in the annotation of B10K genomes
Basset
Convolutional neural network analysis for predicting DNA sequence activity.
bx-python
Tools for manipulating biological data, particularly multiple sequence alignments
cactus
Official home of genome aligner based upon notion of Cactus graphs
Cactus_Alignments_Tools
The toolbox used to deal with cactus whole genome alignments
CMB-PLAINS
song984888's Repositories
song984888/awesome-public-datasets
A topic-centric list of HQ open datasets.
song984888/bx-python
Tools for manipulating biological data, particularly multiple sequence alignments
song984888/cactus
Official home of genome aligner based upon notion of Cactus graphs
song984888/CMB-PLAINS
song984888/CrossTalkeR
R package to do the Ligand Receptor Analysis Visualization
song984888/dbCNS
Database of conserved non-coding sequence
song984888/deep_learning_and_the_game_of_go
Code and other material for the book "Deep Learning and the Game of Go"
song984888/elabftw
:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
song984888/genome-megahit
Ultra-fast and memory-efficient (meta-)genome assembler
song984888/genomeAssemblyAscessTool--quast
Genome assembly evaluation tool
song984888/hist2RNA
Code coming soon
song984888/hover_net
Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
song984888/omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
song984888/pangenome_pipeline-psvcp_v1.01
Pan-genome Construction and Population Structure Variation Calling pipeline
song984888/plantCNEs
song984888/pyradiomics
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
song984888/scanorama
Panoramic stitching of single cell data (integratation of scRNA datasets)
song984888/scDrug
scDrug: From scRNA-seq to Drug Repositioning
song984888/scPlant
A versatile framework for single-cell transcriptomic data analysis in plants.
song984888/scrna-recom
collected resource for scRNA-seq analysis
song984888/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
song984888/SpectralTAD
TAD Calling using spectral clustering in R
song984888/stardist
StarDist - Object Detection with Star-convex Shapes
song984888/STUDY-intro_python
Lecture Notes and Slides for UCSC CSE20, formatted as Jupyter Notebooks.
song984888/test
song984888/ThinkStats2
Text and supporting code for Think Stats, 2nd Edition
song984888/trackHubs_test
GitHub Pages TrackHub for UCSC Genome Browser
song984888/V.PhyloMaker2
This package (an updated version of 'V.PhyloMaker') can generate a phylogenetic tree for vascular plants based on three different botanical nomenclature systems.
song984888/YS-micsSuite.github.io
OmicsSuite website for releasing new version.
song984888/YS-multi-omic-longitudinal-PALMO
Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset