songlab-cal/rna-sieve

installation errors

Closed this issue · 3 comments

mooreann commented

Is there an alternate way to install or certain dependency packages it relies on that I may not have? Heres the installation error I'm getting:

(base) [mooreank@lngnode2 ~]$ pip3 install rna-sieve
ERROR: Could not find a version that satisfies the requirement rna-sieve (from versions: none)
ERROR: No matching distribution found for rna-sieve
(base) [mooreank@lngnode2 ~]$ pip install rna-sieve
ERROR: Could not find a version that satisfies the requirement rna-sieve (from versions: none)
ERROR: No matching distribution found for rna-sieve

mooreann commented

Also how should data be formatted? Genes x samples? Are you going to put your example data up soon?

  • 👍1
justjhong commented

Apologies, that was a typo, you can install the package at rnasieve not rna-sieve. The example data will not be uploaded to this repository, but the .h5ad can be found freely from the Tabula Muris Senis AWS bucket here: https://s3.console.aws.amazon.com/s3/buckets/czb-tabula-muris-senis/. The example notebook uses files from there without modification.

numpde commented

Also how should data be formatted? Genes x samples? Are you going to put your example data up soon?

From cell [5] in the notebook it appear that it is "genes x samples".