songlab-cal/rna-sieve

According to the example Jupyter notebook for Python 3 usage on github, but an error is reported

xiaoquexingchen opened this issue · 3 comments

Hello:
I followed the example Jupyter notebook for Python 3 usage on GitHub, but I kept reporting the error "ValueError: all the input arrays must have same number of dimensions, but the array at index 0 has 2 dimension(s) and the array at index 1 has 1 dimension(s)", is this a data problem? But I just downloaded the dataset according to the code on github. I don't know what the problem is? Hope to get your answer, look forward to your reply, thank you very much!

Best wishes !

Hi @xiaoquexingchen, thanks for bringing this up, I believe this bug popped up when I introduced the data download script. The example data we used changed format slightly from before. I'll have this fixed in an upcoming update hopefully this week.

@xiaoquexingchen Please give it another try on the latest commit of the repo. Let me know if you experience any issues.

Closing due to staleness, other users have reported this fix working for them in the notebook.