Original gene indices not retained during preprocessing
Closed this issue · 1 comments
justjhong commented
Can be resolved by initializing a Pandas dataframe before the gene filtering in this step https://github.com/songlab-cal/rna-sieve/blob/master/rnasieve/preprocessing.py#L320-L331. Can also allow for the user to provide a list of gene names during this step to assign to the dataframe index.