Failure in test_write_jwst_siaf_xlsx and test_write_jwst_siaf_xml
Hellseher opened this issue · 0 comments
Hellseher commented
Hi,
Wile preparing this project for Guix I've faced with 2 test failures:
__________________________ test_write_jwst_siaf_xlsx ___________________________
[gw10] linux -- Python 3.10.7 /gnu/store/jh59fh48mcffyz5wmsjj0p96xkkflbz0-python-wrapper-3.10.7/bin/python
tmpdir = local('/tmp/guix-build-python-pysiaf-0.22.0.drv-0/pytest-of-nixbld/pytest-0/popen-gw10/test_write_jwst_siaf_xlsx0')
@pytest.mark.skipif(ON_GITHUB_ACTIONS, reason="Don't want to write and remove dirs on GHA Server")
def test_write_jwst_siaf_xlsx(tmpdir):
"""Basic test to check that JWST SIAF XLSX file is written out"""
aperture = JwstAperture()
aperture.AperName = 'MIRIM_FULL_OSS'
aperture.InstrName = 'MIRI'
aperture.VIdlParity = 1
aperture.DetSciYAngle = 0
aperture.DetSciParity = 1
aperture_dict = {
'MIRIM_FULL_OSS': aperture
}
aperture_collection = ApertureCollection(aperture_dict)
filename = os.path.join(tmpdir, 'test_miri.xlsx')
> write_jwst_siaf(aperture_collection, filename=filename,
file_format='xlsx', verbose=False)
pysiaf/tests/test_iando.py:62:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
aperture_collection = <pysiaf.siaf.ApertureCollection object at 0x7fff60c37460> [92/1868]
filename = '/tmp/guix-build-python-pysiaf-0.22.0.drv-0/pytest-of-nixbld/pytest-0/popen-gw10/test_write_jwst_siaf_xlsx0/test_miri.xlsx'
basepath = None, label = None, file_format = ['xlsx'], verbose = False
def write_jwst_siaf(aperture_collection, filename=None, basepath=None, label=None,
file_format='xml', verbose=True):
"""Write the content of aperture_collection into xml and xlsx files that are PRD-compliant.
Parameters
----------
aperture_collection : ApertureCollection
dictionary of apertures
filename : str
The file name and path if you do not wish to use the default naming
basepath : str
If you wish to use the default naming, basepath allows you to set the path where the file will be saved
label : str
Append default file name ("INSTR_SIAF") with this string
file_format : str list
one of ['xml', 'xlsx', 'csv', and formats supported by astropy Table.write]
verbose
Returns
-------
filenames : list
list of the filenames written out
.. todo:: test support of astropy Table.write formats (FITS not working)
"""
if type(file_format) == str:
file_format = [file_format]
aperture_names = np.array([key for key in aperture_collection.apertures.keys()])
instrument = aperture_collection.apertures[aperture_names[0]].InstrName
if instrument == 'NIRCAM':
instrument = 'NIRCam'
elif instrument == 'NIRSPEC':
instrument = 'NIRSpec'
if (filename is not None) and (len(list(file_format)) != 1):
raise RuntimeError('When filename is specified, only one output format is supported')
if label is not None:
name_seed = instrument + '_SIAF_{}'.format(label)
else:
name_seed = instrument + '_SIAF'
filenames = []
# hostname = os.uname()[1]
> username = os.getlogin()
E OSError: [Errno 6] No such device or address
pysiaf/iando/write.py:84: OSError
___________________________ test_write_jwst_siaf_xml ___________________________
[gw9] linux -- Python 3.10.7 /gnu/store/jh59fh48mcffyz5wmsjj0p96xkkflbz0-python-wrapper-3.10.7/bin/python
tmpdir = local('/tmp/guix-build-python-pysiaf-0.22.0.drv-0/pytest-of-nixbld/pytest-0/popen-gw9/test_write_jwst_siaf_xml0')
@pytest.mark.skipif(ON_GITHUB_ACTIONS, reason="Don't want to write and remove dirs on GHA Server")
def test_write_jwst_siaf_xml(tmpdir):
"""Basic test to check that JWST SIAF XML file is written out"""
aperture = JwstAperture()
aperture.AperName = 'MIRIM_FULL_OSS'
aperture.InstrName = 'MIRI'
aperture.VIdlParity = 1
aperture.DetSciYAngle = 0
aperture.DetSciParity = 1
aperture_dict = {
'MIRIM_FULL_OSS': aperture
}
aperture_collection = ApertureCollection(aperture_dict)
filename = os.path.join(tmpdir, 'test_miri.xml')
> write_jwst_siaf(aperture_collection, filename=filename,
file_format='xml', verbose=False)
pysiaf/tests/test_iando.py:37:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
aperture_collection = <pysiaf.siaf.ApertureCollection object at 0x7fff60c23460>
filename = '/tmp/guix-build-python-pysiaf-0.22.0.drv-0/pytest-of-nixbld/pytest-0/popen-gw9/test_write_jwst_siaf_xml0/test_miri.xml'
basepath = None, label = None, file_format = ['xml'], verbose = False
def write_jwst_siaf(aperture_collection, filename=None, basepath=None, label=None,
file_format='xml', verbose=True):
"""Write the content of aperture_collection into xml and xlsx files that are PRD-compliant.
Parameters
----------
aperture_collection : ApertureCollection
dictionary of apertures
filename : str
The file name and path if you do not wish to use the default naming
basepath : str
If you wish to use the default naming, basepath allows you to set the path where the file will be saved
label : str
Append default file name ("INSTR_SIAF") with this string
file_format : str list
one of ['xml', 'xlsx', 'csv', and formats supported by astropy Table.write]
verbose
Returns
-------
filenames : list
list of the filenames written out
.. todo:: test support of astropy Table.write formats (FITS not working)
"""
if type(file_format) == str:
file_format = [file_format]
aperture_names = np.array([key for key in aperture_collection.apertures.keys()])
instrument = aperture_collection.apertures[aperture_names[0]].InstrName
if instrument == 'NIRCAM':
instrument = 'NIRCam'
elif instrument == 'NIRSPEC':
instrument = 'NIRSpec'
if (filename is not None) and (len(list(file_format)) != 1):
raise RuntimeError('When filename is specified, only one output format is supported')
if label is not None:
name_seed = instrument + '_SIAF_{}'.format(label)
else:
name_seed = instrument + '_SIAF'
filenames = []
# hostname = os.uname()[1]
> username = os.getlogin()
E OSError: [Errno 6] No such device or address
pysiaf/iando/write.py:84: OSError
=========================== short test summary info ============================
FAILED pysiaf/tests/test_iando.py::test_write_jwst_siaf_xlsx - OSError: [Errn...
FAILED pysiaf/tests/test_iando.py::test_write_jwst_siaf_xml - OSError: [Errno...
================= 2 failed, 30 passed, 128 warnings in 18.76s ===================
pysiaf - soruce was taken from PyPI archive https://files.pythonhosted.org/packages/93/4c/56ae214918ca8fd15073ef7a32cedab5b0b6edcd622016669d15664f5174/pysiaf-0.22.0.tar.gz
Inputs from the first level:
- python-pytest@7.1.3
- python-pytest-xdist@2.5.0
- python-astropy@6.0.0
- python-lxml@4.9.1
- python-matplotlib@3.8.2
- python-numpy@1.23.2
- python-numpydoc@1.5.0
- python-openpyxl@3.0.9
- python-requests@2.28.1
- python-scipy@1.12.0