Pymol ScrIpt COllection (PSICO)

psico is a python module which extends PyMOL, a molecular visualization tool (https://pymol.org).

Documentation

A reference document with all commands can be generated with:

psico.helping.write_html_ref('psico-commands.html')

Option 1: Install from source. In your activated (conda or venv) environment, run:

pip install .

Option 2: Use a conda-compatible package manager. In your activated conda environment, run:

micromamba install speleo3::pymol-psico

To activate all psico commands in PyMOL, add this to your ~/.pymolrc.py file (or just enter into the PyMOL command line):

import psico.fullinit

Some functions in psico require the following python modules:

psico has several wrappers for external tools. For full support, you need these binaries: